Convert Microarray Data to Excel Files
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import os
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import re
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import pandas
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RE_NATURAL_SORT = re.compile('([0-9]+)')
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convert = lambda text: int(text) if text.isdigit() else text.lower()
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natural_sort = lambda item: [convert(c) for c in RE_NATURAL_SORT.split(item)]
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def read_data_file(data_file, usecols):
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with open(data_file.path, 'r', encoding='UTF-8') as file_handle:
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return pandas.read_csv(
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file_handle, sep='\t', decimal=data_file.separator, header=0,
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index_col=False, skiprows=data_file.skip, usecols=usecols)
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def write_excel_file(path, data_frame):
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data_frame.to_excel(path)
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