changed default output directory

sensospot_images/__init__.py

@@ -159,18 +159,20 @@ def process(
     "-o",
     "--output",
     default=None,
-    help="Output directory name, defaults to folder on desktop",
+    help="Output directory name, defaults to new folder in parent of source",
 )
 @click.option(
     "-w",
     "--wells",
     default="*",
+    show_default=True,
     help="restrict to this wells, * = all",
 )
 @click.option(
     "-e",
     "--Exposures",
     default="*",
+    show_default=True,
     help="restrict to this exposure ids, * = all",
 )
 @click.option(
@@ -178,21 +180,22 @@ def process(
     "--scale",
     type=int,
     default=3,
+    show_default=True,
     help="scale-up of images",
 )
 @click.option(
     "--spots",
     default=False,
     is_flag=True,
+    show_default=True,
     help="include cropped images of spots",
 )
 def run(source, output=None, wells="*", exposures="*", scale=3, spots=False):
+    source = Path(source)
     if output is None or not Path(output).is_dir():
-        default = Path.home() / "Desktop"
+        parent = source.absolute().parent
-        if not default.is_dir():
-            default = Path.home()
         now = datetime.now().strftime("%Y-%m-%d %H-%M-%S")
-        output = default / now
+        output = parent / now
         output.mkdir(exist_ok=True)
 
     process(source, output, wells, exposures, scale, spots)