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@ -13,10 +13,10 @@ from .columns import ( |
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COL_NAME_POS_ID, |
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COL_NAME_POS_ID, |
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COL_NAME_WELL_ROW, |
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COL_NAME_WELL_ROW, |
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COL_NAME_SPOT_FOUND, |
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COL_NAME_SPOT_FOUND, |
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RAW_DATA_COLUMN_SET, |
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COL_NAME_EXPOSURE_ID, |
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COL_NAME_EXPOSURE_ID, |
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COL_NAME_WELL_COLUMN, |
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COL_NAME_WELL_COLUMN, |
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COL_NAME_SPOT_DIAMETER, |
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COL_NAME_SPOT_DIAMETER, |
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RAW_DATA_COLUMN_SET |
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) |
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) |
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from .parameters import add_optional_measurement_parameters |
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from .parameters import add_optional_measurement_parameters |
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@ -80,7 +80,7 @@ def _extract_measurement_info(data_file): |
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def _cleanup_data_columns(data_frame): |
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def _cleanup_data_columns(data_frame): |
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""" renames some data columns for consistency and drops unused columns """ |
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""" renames some data columns for consistency and drops unused columns """ |
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renamed = data_frame.rename(columns=COLUMNS_RENAME_MAP) |
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renamed = data_frame.rename(columns=COLUMNS_RENAME_MAP) |
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surplus_columns = set(renamed.columns) - RAW_DATA_COLUMN_SET |
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surplus_columns = set(renamed.columns) - RAW_DATA_COLUMN_SET |
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return renamed.drop(columns=surplus_columns) |
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return renamed.drop(columns=surplus_columns) |
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