renamed the "parser" module to "csv_parser"

The "csv_parser" module will be used as a backup if the analysis xml file is not present.

src/sensospot_parser/__init__.py

@@ -12,7 +12,7 @@ import click
 import pandas
 
 from . import columns  # noqa: F401
-from .parser import parse_file, parse_folder  # noqa: F401
+from .csv_parser import parse_file, parse_folder  # noqa: F401
 
 DEFAULT_OUTPUT_FILENAME = "collected_data.csv"
 

tests/test_csv_parser.py

@@ -25,7 +25,7 @@ from .conftest import (
     ],
 )
 def test_parse_csv(example_dir, sub_dir, file_name):
-    from sensospot_parser.parser import _parse_csv
+    from sensospot_parser.csv_parser import _parse_csv
 
     result = _parse_csv(example_dir / sub_dir / file_name)
 
@@ -60,7 +60,7 @@ def test_parse_csv(example_dir, sub_dir, file_name):
 
 
 def test_parse_csv_no_array(example_dir):
-    from sensospot_parser.parser import _parse_csv
+    from sensospot_parser.csv_parser import _parse_csv
 
     result = _parse_csv(example_dir / "no_array_A1_1.csv")
 
@@ -74,7 +74,7 @@ def test_parse_csv_no_array(example_dir):
 def test_guess_decimal_separator_returns_correct_separator(input, expected):
     from io import StringIO
 
-    from sensospot_parser.parser import _guess_decimal_separator
+    from sensospot_parser.csv_parser import _guess_decimal_separator
 
     handle = StringIO(f"header\n{input}\n")
     result = _guess_decimal_separator(handle)
@@ -85,7 +85,7 @@ def test_guess_decimal_separator_returns_correct_separator(input, expected):
 def test_guess_decimal_separator_rewinds_handle():
     from io import StringIO
 
-    from sensospot_parser.parser import _guess_decimal_separator
+    from sensospot_parser.csv_parser import _guess_decimal_separator
 
     handle = StringIO("\n".join(["header", "data_line"]))
     _guess_decimal_separator(handle)
@@ -94,7 +94,7 @@ def test_guess_decimal_separator_rewinds_handle():
 
 
 def test_well_regex_ok():
-    from sensospot_parser.parser import REGEX_WELL
+    from sensospot_parser.csv_parser import REGEX_WELL
 
     result = REGEX_WELL.match("AbC123")
 
@@ -104,7 +104,7 @@ def test_well_regex_ok():
 
 @pytest.mark.parametrize("input", ["", "A", "1", "1A", "-1", "A-"])
 def test_well_regex_no_match(input):
-    from sensospot_parser.parser import REGEX_WELL
+    from sensospot_parser.csv_parser import REGEX_WELL
 
     result = REGEX_WELL.match(input)
 
@@ -116,7 +116,7 @@ def test_well_regex_no_match(input):
     [("A1_1.csv", ("A", 1, 1)), ("test/measurement_1_H12_2", ("H", 12, 2))],
 )
 def test_extract_measurement_info_ok(filename, expected):
-    from sensospot_parser.parser import _extract_measurement_info
+    from sensospot_parser.csv_parser import _extract_measurement_info
 
     result = _extract_measurement_info(filename)
 
@@ -125,7 +125,7 @@ def test_extract_measurement_info_ok(filename, expected):
 
 @pytest.mark.parametrize("filename", ["wrong_exposure_A1_B", "no_well_XX_1"])
 def test_extract_measurement_info_raises_error(filename):
-    from sensospot_parser.parser import _extract_measurement_info
+    from sensospot_parser.csv_parser import _extract_measurement_info
 
     with pytest.raises(ValueError):
         _extract_measurement_info(filename)
@@ -134,7 +134,7 @@ def test_extract_measurement_info_raises_error(filename):
 def test_cleanup_data_columns():
     from pandas import DataFrame
 
-    from sensospot_parser.parser import _cleanup_data_columns
+    from sensospot_parser.csv_parser import _cleanup_data_columns
 
     columns = ["Rect.", "Contour", " ID ", "Found", "Dia."]
     data = {col: [i] for i, col in enumerate(columns)}
@@ -149,7 +149,7 @@ def test_cleanup_data_columns():
 
 
 def test_parse_file(example_file):
-    from sensospot_parser.parser import parse_file
+    from sensospot_parser.csv_parser import parse_file
 
     result = parse_file(example_file)
 
@@ -191,7 +191,7 @@ def test_parse_file(example_file):
 
 
 def test_parse_file_raises_error(example_dir):
-    from sensospot_parser.parser import parse_file
+    from sensospot_parser.csv_parser import parse_file
 
     csv_file = (
         example_dir / EXAMPLE_DIR_WITH_PARAMS / "should_raise_value_error.csv"
@@ -202,7 +202,7 @@ def test_parse_file_raises_error(example_dir):
 
 
 def test_parse_file_silenced_returns_data_frame(example_file):
-    from sensospot_parser.parser import _parse_file_silenced
+    from sensospot_parser.csv_parser import _parse_file_silenced
 
     result = _parse_file_silenced(example_file)
 
@@ -212,7 +212,7 @@ def test_parse_file_silenced_returns_data_frame(example_file):
 
 
 def test_parse_file_silenced_returns_none_on_error(example_dir):
-    from sensospot_parser.parser import _parse_file_silenced
+    from sensospot_parser.csv_parser import _parse_file_silenced
 
     csv_file = (
         example_dir / EXAMPLE_DIR_WITH_PARAMS / "should_raise_value_error.csv"
@@ -234,7 +234,7 @@ def test_parse_file_silenced_returns_none_on_error(example_dir):
     ],
 )
 def testparse_multiple_files_ok(example_dir, file_list):
-    from sensospot_parser.parser import parse_multiple_files
+    from sensospot_parser.csv_parser import parse_multiple_files
 
     sub_dir = example_dir / EXAMPLE_DIR_WO_PARAMS
     files = [sub_dir / file for file in file_list]
@@ -247,14 +247,14 @@ def testparse_multiple_files_ok(example_dir, file_list):
 
 
 def testparse_multiple_files_empty_file_list():
-    from sensospot_parser.parser import parse_multiple_files
+    from sensospot_parser.csv_parser import parse_multiple_files
 
     with pytest.raises(ValueError):
         parse_multiple_files([])
 
 
 def testparse_multiple_files_empty_array(example_dir):
-    from sensospot_parser.parser import parse_multiple_files
+    from sensospot_parser.csv_parser import parse_multiple_files
 
     files = [example_dir / "no_array_A1_1.csv"]
 
@@ -265,7 +265,7 @@ def testparse_multiple_files_empty_array(example_dir):
 
 
 def test_find_csv_files(example_dir):
-    from sensospot_parser.parser import find_csv_files
+    from sensospot_parser.csv_parser import find_csv_files
 
     result = list(find_csv_files(example_dir / EXAMPLE_DIR_WITH_PARAMS))
 
@@ -275,7 +275,7 @@ def test_find_csv_files(example_dir):
 
 
 def test_parse_folder_no_datetime_records(example_dir):
-    from sensospot_parser.parser import parse_folder
+    from sensospot_parser.csv_parser import parse_folder
 
     data_frame = parse_folder(example_dir / EXAMPLE_DIR_WITH_PARAMS)
 
@@ -290,7 +290,7 @@ def test_parse_folder_no_datetime_records(example_dir):
 
 
 def test_parse_folder_with_datetime_records(example_dir):
-    from sensospot_parser.parser import parse_folder
+    from sensospot_parser.csv_parser import parse_folder
 
     data_frame = parse_folder(example_dir / EXAMPLE_DIR_WITH_RECORD)
 
@@ -305,7 +305,7 @@ def test_parse_folder_with_datetime_records(example_dir):
 
 
 def test_sanity_check_ok(example_dir):
-    from sensospot_parser.parser import _sanity_check, parse_multiple_files
+    from sensospot_parser.csv_parser import _sanity_check, parse_multiple_files
 
     sub_dir = example_dir / EXAMPLE_DIR_WO_PARAMS
     file_list = [
@@ -321,7 +321,7 @@ def test_sanity_check_ok(example_dir):
 
 
 def test_sanity_check_raises_value_error(example_dir):
-    from sensospot_parser.parser import _sanity_check, parse_multiple_files
+    from sensospot_parser.csv_parser import _sanity_check, parse_multiple_files
 
     sub_dir = example_dir / EXAMPLE_DIR_WO_PARAMS
     file_list = [