From 99d0e0fa4e64a4eae729065612c85d522f28cf76 Mon Sep 17 00:00:00 2001
From: Holger Frey <frey@imtek.de>
Date: Tue, 3 Jan 2023 12:08:16 +0100
Subject: [PATCH] renamed test cases and added a new one for xml parsing

---
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 Makefile                                      |      2 +-
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 tests/test_parameters.py                      |     16 +-
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diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index 55ad1bb..372083c 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -33,7 +33,7 @@ repos:
         pass_filenames: false
     -   id: flake8
         name: flake8 test
-        entry: flake8 --ignore S101 tests
+        entry: flake8 --ignore S101,W503 tests
         language: system
         pass_filenames: false
     -   id: pytest
diff --git a/Makefile b/Makefile
index 866a958..be53078 100644
--- a/Makefile
+++ b/Makefile
@@ -58,7 +58,7 @@ lint: ## reformat with black and check style with flake8
 	isort tests
 	black src tests
 	flake8 --ignore E231,W503,E402 src
-	flake8 --ignore S101 tests
+	flake8 --ignore S101,W503 tests
 
 test: lint ## run tests quickly, stop on first error
 	pytest tests -x -l --last-failed --disable-warnings -m "not functional"
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diff --git a/example_data/mtp_wo_parameters/160218_SG2-013-001_Regen1_Cy3-100_1_H3_2.csv b/example_data/csv_wo_parameters/160218_SG2-013-001_Regen1_Cy3-100_1_H3_2.csv
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diff --git a/example_data/mtp_wo_parameters/160218_SG2-013-001_Regen1_Cy3-100_1_H3_3.csv b/example_data/csv_wo_parameters/160218_SG2-013-001_Regen1_Cy3-100_1_H3_3.csv
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diff --git a/example_data/mtp_wo_parameters/160218_SG2-013-001_Regen1_Cy3-100_1_H4_1.csv b/example_data/csv_wo_parameters/160218_SG2-013-001_Regen1_Cy3-100_1_H4_1.csv
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diff --git a/example_data/mtp_wo_parameters/160218_SG2-013-001_Regen1_Cy3-100_1_H4_2.csv b/example_data/csv_wo_parameters/160218_SG2-013-001_Regen1_Cy3-100_1_H4_2.csv
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diff --git a/example_data/mtp_wo_parameters/160218_SG2-013-001_Regen1_Cy3-100_1_H4_3.csv b/example_data/csv_wo_parameters/160218_SG2-013-001_Regen1_Cy3-100_1_H4_3.csv
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diff --git a/example_data/mtp_wo_parameters/160218_SG2-013-001_Regen1_Cy3-100_1_H5_1.csv b/example_data/csv_wo_parameters/160218_SG2-013-001_Regen1_Cy3-100_1_H5_1.csv
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diff --git a/example_data/mtp_wo_parameters/160218_SG2-013-001_Regen1_Cy3-100_1_H5_2.csv b/example_data/csv_wo_parameters/160218_SG2-013-001_Regen1_Cy3-100_1_H5_2.csv
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diff --git a/example_data/mtp_wo_parameters/160218_SG2-013-001_Regen1_Cy3-100_1_H5_3.csv b/example_data/csv_wo_parameters/160218_SG2-013-001_Regen1_Cy3-100_1_H5_3.csv
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diff --git a/example_data/mtp_wo_parameters/160218_SG2-013-001_Regen1_Cy3-100_1_H6_1.csv b/example_data/csv_wo_parameters/160218_SG2-013-001_Regen1_Cy3-100_1_H6_1.csv
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diff --git a/example_data/mtp_wo_parameters/160218_SG2-013-001_Regen1_Cy3-100_1_H6_2.csv b/example_data/csv_wo_parameters/160218_SG2-013-001_Regen1_Cy3-100_1_H6_2.csv
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diff --git a/example_data/mtp_wo_parameters/160218_SG2-013-001_Regen1_Cy3-100_1_H6_3.csv b/example_data/csv_wo_parameters/160218_SG2-013-001_Regen1_Cy3-100_1_H6_3.csv
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diff --git a/example_data/mtp_wo_parameters/160218_SG2-013-001_Regen1_Cy3-100_1_H7_1.csv b/example_data/csv_wo_parameters/160218_SG2-013-001_Regen1_Cy3-100_1_H7_1.csv
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diff --git a/example_data/mtp_wo_parameters/160218_SG2-013-001_Regen1_Cy3-100_1_H7_2.csv b/example_data/csv_wo_parameters/160218_SG2-013-001_Regen1_Cy3-100_1_H7_2.csv
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diff --git a/example_data/mtp_wo_parameters/160218_SG2-013-001_Regen1_Cy3-100_1_H7_3.csv b/example_data/csv_wo_parameters/160218_SG2-013-001_Regen1_Cy3-100_1_H7_3.csv
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diff --git a/example_data/mtp_wo_parameters/160218_SG2-013-001_Regen1_Cy3-100_1_H8_1.csv b/example_data/csv_wo_parameters/160218_SG2-013-001_Regen1_Cy3-100_1_H8_1.csv
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diff --git a/example_data/mtp_wo_parameters/160218_SG2-013-001_Regen1_Cy3-100_1_H8_2.csv b/example_data/csv_wo_parameters/160218_SG2-013-001_Regen1_Cy3-100_1_H8_2.csv
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diff --git a/example_data/mtp_wo_parameters/160218_SG2-013-001_Regen1_Cy3-100_1_H8_3.csv b/example_data/csv_wo_parameters/160218_SG2-013-001_Regen1_Cy3-100_1_H8_3.csv
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diff --git a/example_data/mtp_wo_parameters/160218_SG2-013-001_Regen1_Cy3-100_1_H9_1.csv b/example_data/csv_wo_parameters/160218_SG2-013-001_Regen1_Cy3-100_1_H9_1.csv
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diff --git a/example_data/mtp_wo_parameters/160218_SG2-013-001_Regen1_Cy3-100_1_H9_2.csv b/example_data/csv_wo_parameters/160218_SG2-013-001_Regen1_Cy3-100_1_H9_2.csv
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diff --git a/example_data/mtp_wo_parameters/160218_SG2-013-001_Regen1_Cy3-100_1_H9_3.csv b/example_data/csv_wo_parameters/160218_SG2-013-001_Regen1_Cy3-100_1_H9_3.csv
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diff --git a/example_data/record_time/220307_SN0801_CHECK-01_SL1,11,9,14_MS_1_1_A01_1.csv b/example_data/record_time/220307_SN0801_CHECK-01_SL1,11,9,14_MS_1_1_A01_1.csv
deleted file mode 100644
index 40b4226..0000000
--- a/example_data/record_time/220307_SN0801_CHECK-01_SL1,11,9,14_MS_1_1_A01_1.csv
+++ /dev/null
@@ -1,101 +0,0 @@
- ID 	Pos.X	Pos.Y	Bkg.Mean	Spot.Mean	Bkg.Median	Spot.Median	Bkg.StdDev	Spot.StdDev	Bkg.Sum	Spot.Sum	Bkg.Area	Spot.Area	Spot.Sat. (%)	Found	Pos.Nom.X	Pos.Nom.Y	Dia.	Id	Name	Rect.	Contour
-1	228	232	0.235384931733497	0.950414913363403	0.234714274814984	1	0.00700611064105654	0.145736855002289	20038311	53627765	1299	861	81	True	227	233	33			{X=0,Y=0,Width=0,Height=0}
-2	280	233	0.231177412089856	0.230250627451245	0.230884260318914	0.230121309224079	0.00500863872911266	0.00402261404146659	19680125	8706627	1299	577	0	False	280	233	27			{X=0,Y=0,Width=0,Height=0}
-3	333	233	0.229714296252794	0.230259275111834	0.229770351720455	0.230472266727703	0.0038286865702095	0.00370900107593368	19555570	8706954	1299	577	0	False	333	233	27			{X=0,Y=0,Width=0,Height=0}
-4	386	233	0.229662810268981	0.230139054117827	0.229587243457694	0.230289158464942	0.00378767522678395	0.00358402252212931	19551187	8702408	1299	577	0	False	386	233	27			{X=0,Y=0,Width=0,Height=0}
-5	439	234	0.232369307329094	0.230064213507831	0.230380712596323	0.230121309224079	0.0212765822282069	0.00460353632811885	19781591	8699578	1299	577	0	False	439	234	27			{X=0,Y=0,Width=0,Height=0}
-6	493	234	0.230382286660167	0.230396474081679	0.230350194552529	0.230273899443046	0.00593730637130429	0.00630438389173862	19612436	8712142	1299	577	0	False	493	234	27			{X=0,Y=0,Width=0,Height=0}
-7	546	234	0.231750359582551	0.230316423718973	0.230960555428397	0.230090791180285	0.00719209350114273	0.00580210518679085	19728900	8709115	1299	577	0	False	546	234	27			{X=0,Y=0,Width=0,Height=0}
-8	599	234	0.230173617480049	0.230567708339531	0.230334935530632	0.230441748683909	0.00432629013521393	0.004444015833161	19594672	8718617	1299	577	0	False	599	234	27			{X=0,Y=0,Width=0,Height=0}
-9	652	234	0.231355833401318	0.230911393345718	0.231540398260472	0.230884260318914	0.00419927738804394	0.00400786867205555	19695314	8731613	1299	577	0	False	652	234	27			{X=0,Y=0,Width=0,Height=0}
-10	702	232	0.235054401819618	0.921638884817987	0.234729533836881	1	0.00486578771734954	0.194459810997062	20010173	58768815	1299	973	80	True	705	235	34			{X=0,Y=0,Width=0,Height=0}
-11	227	285	0.230273899443046	0.23020609332148	0.230304417486839	0.229755092698558	0.00480406129937769	0.00497662437236967	19603209	8704943	1299	577	0	False	227	285	27			{X=0,Y=0,Width=0,Height=0}
-12	280	285	0.230155644960033	0.230304602604956	0.230106050202182	0.230289158464942	0.00401053636154393	0.003912658528098	19593142	8708668	1299	577	0	False	280	285	27			{X=0,Y=0,Width=0,Height=0}
-13	333	286	0.23008801894844	0.230149314950575	0.230029755092699	0.230243381399252	0.00356467395903897	0.00356565194811195	19587385	8702796	1299	577	0	False	333	286	27			{X=0,Y=0,Width=0,Height=0}
-14	386	286	0.230195536906423	0.230159205547091	0.230151827267872	0.230167086289769	0.00374342338211412	0.00342279687953275	19596538	8703170	1299	577	0	False	386	286	27			{X=0,Y=0,Width=0,Height=0}
-15	439	286	0.23070457035898	0.230356382786713	0.230685893034257	0.230319676508736	0.00398423665641129	0.00400619330353755	19639872	8710626	1299	577	0	False	439	286	27			{X=0,Y=0,Width=0,Height=0}
-16	492	286	0.230723036242291	0.231407139661966	0.230792706187533	0.231586175326162	0.0048932229149775	0.00518652330267933	19641444	8750359	1299	577	0	False	492	286	27			{X=0,Y=0,Width=0,Height=0}
-17	546	287	0.230489323001601	0.231225221444241	0.230380712596323	0.231311512932021	0.00481728620728938	0.0047051380334733	19621548	8743480	1299	577	0	False	546	287	27			{X=0,Y=0,Width=0,Height=0}
-18	599	287	0.230804030049819	0.230552978226539	0.230685893034257	0.230685893034257	0.00409917296373056	0.00454419488559169	19648339	8718060	1299	577	0	False	599	287	27			{X=0,Y=0,Width=0,Height=0}
-19	652	287	0.230689851687358	0.230541844694098	0.23071641107805	0.230548561837186	0.00358169108212675	0.00314026712190925	19638619	8717639	1299	577	0	False	652	287	27			{X=0,Y=0,Width=0,Height=0}
-20	705	287	0.230855563020612	0.230806457819052	0.23080796520943	0.230838483253223	0.00350349728109732	0.00375624307682139	19652726	8727645	1299	577	0	False	705	287	27			{X=0,Y=0,Width=0,Height=0}
-21	226	338	0.230110936848147	0.230433841495786	0.230106050202182	0.230609597924773	0.00488500439014703	0.00491136290899423	19589336	8713555	1299	577	0	False	226	338	27			{X=0,Y=0,Width=0,Height=0}
-22	279	338	0.230688618279122	0.230426701225574	0.23071641107805	0.230106050202182	0.00407168488992683	0.0037698511617902	19638514	8713285	1299	577	0	False	279	338	27			{X=0,Y=0,Width=0,Height=0}
-23	333	338	0.230712475918438	0.231260102986497	0.230685893034257	0.230960555428397	0.00365837370944228	0.00359636664341859	19640545	8744799	1299	577	0	False	333	338	27			{X=0,Y=0,Width=0,Height=0}
-24	386	338	0.231021262607121	0.230738281461254	0.231021591515984	0.23089951934081	0.00415662762099473	0.00386695441809965	19666832	8725067	1299	577	0	False	386	338	27			{X=0,Y=0,Width=0,Height=0}
-25	439	339	0.231482498553829	0.231227231298079	0.231372549019608	0.231235217822538	0.00420100895163217	0.00393307131820704	19706097	8743556	1299	577	0	False	439	339	27			{X=0,Y=0,Width=0,Height=0}
-26	492	339	0.231588924064517	0.23310676198134	0.231479362172885	0.232043945983062	0.00462518184881	0.00868222153120191	19715157	8814628	1299	577	0	False	492	339	27			{X=0,Y=0,Width=0,Height=0}
-27	545	339	0.231392823901666	0.231529238282585	0.231403067063401	0.231647211413748	0.00456168323040558	0.00434895403930853	19698463	8754976	1299	577	0	False	545	339	27			{X=0,Y=0,Width=0,Height=0}
-28	599	339	0.231395478666061	0.231155669923291	0.231555657282368	0.231128404669261	0.00422984588558967	0.00436950333093123	19698689	8740850	1299	577	0	False	599	339	27			{X=0,Y=0,Width=0,Height=0}
-29	652	340	0.230924927550481	0.230742856523278	0.230914778362707	0.230640115968566	0.00369507661031607	0.00385483859271634	19658631	8725240	1299	577	0	False	652	340	27			{X=0,Y=0,Width=0,Height=0}
-30	705	340	0.23037985508393	0.235619766859599	0.230457007705806	0.231311512932021	0.00355208348925317	0.0195091421001302	19612229	8909654	1299	577	0	False	705	340	27			{X=0,Y=0,Width=0,Height=0}
-31	226	390	0.230522554543515	0.230003150974799	0.230197604333562	0.229938200961318	0.00622548717410643	0.00556019588694674	19624377	8697269	1299	577	0	False	226	390	27			{X=0,Y=0,Width=0,Height=0}
-32	279	391	0.230775602926655	0.230649874337856	0.230746929121843	0.230197604333562	0.00468236990033911	0.00442356970601172	19645919	8721724	1299	577	0	False	279	391	27			{X=0,Y=0,Width=0,Height=0}
-33	332	391	0.231208681925336	0.231115287728427	0.231143663691157	0.230914778362707	0.00445057117472149	0.00454153374302205	19682787	8739323	1299	577	0	False	332	391	27			{X=0,Y=0,Width=0,Height=0}
-34	386	391	0.231615342494267	0.232071713700552	0.231616693369955	0.231998168917372	0.00404378025002224	0.00426611601156417	19717406	8775489	1299	577	0	False	386	391	27			{X=0,Y=0,Width=0,Height=0}
-35	439	391	0.233024893173632	0.232251542728104	0.232913710231174	0.231952391851682	0.0044502063333536	0.00401386773260848	19837401	8782289	1299	577	0	False	439	391	27			{X=0,Y=0,Width=0,Height=0}
-36	492	391	0.232229239140413	0.231959585012784	0.232227054245823	0.231876096742199	0.004490129053341	0.00446361900679392	19769667	8771249	1299	577	0	False	492	391	27			{X=0,Y=0,Width=0,Height=0}
-37	545	392	0.232046365812555	0.232136134805128	0.232028686961166	0.231952391851682	0.00411259168203925	0.00396601226270941	19754099	8777925	1299	577	0	False	545	392	27			{X=0,Y=0,Width=0,Height=0}
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-53	332	496	0.231983614700182	0.232432667582472	0.232074464026856	0.232394903486687	0.00388161346440716	0.0038120613126097	19748757	8789138	1299	577	0	False	332	496	27			{X=0,Y=0,Width=0,Height=0}
-54	385	496	0.233197358885323	0.232685168693512	0.233173113603418	0.232761120012207	0.00417438465634226	0.003930257685436	19852083	8798686	1299	577	0	False	385	496	27			{X=0,Y=0,Width=0,Height=0}
-55	438	496	0.233616776419443	0.234695154758084	0.233508812085145	0.234470130464637	0.00554632133722927	0.00593106226898132	19887788	8874691	1299	577	0	False	438	496	27			{X=0,Y=0,Width=0,Height=0}
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-58	598	497	0.232034466359759	0.232540300544551	0.231982909895476	0.232227054245823	0.005058751187973	0.00500216743257131	19753086	8793208	1299	577	0	False	598	497	27			{X=0,Y=0,Width=0,Height=0}
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-61	225	548	0.230801375285424	0.230868895515236	0.230685893034257	0.230792706187533	0.00531511646843404	0.00520602254343511	19648113	8730006	1299	577	0	False	225	548	27			{X=0,Y=0,Width=0,Height=0}
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-63	332	549	0.232749666935726	0.232404080056181	0.232776379034104	0.232272831311513	0.003888340291836	0.00367910429393895	19813971	8788057	1299	577	0	False	332	549	27			{X=0,Y=0,Width=0,Height=0}
-64	385	549	0.233311983624098	0.232796953590491	0.233340962844282	0.232852674143587	0.00370926692352279	0.00338727216917197	19861841	8802913	1299	577	0	False	385	549	27			{X=0,Y=0,Width=0,Height=0}
-65	438	549	0.233638343443463	0.23356149141204	0.233508812085145	0.233493553063249	0.00473488993371286	0.00451145498983221	19889624	8831823	1299	577	0	False	438	549	27			{X=0,Y=0,Width=0,Height=0}
-66	491	549	0.233301822689578	0.233169093895743	0.233173113603418	0.233264667734798	0.00590312124987291	0.00633918905054195	19860976	8816985	1299	577	0	False	491	549	27			{X=0,Y=0,Width=0,Height=0}
-67	545	549	0.233073736139795	0.232646743461595	0.233035782406348	0.23265430685893	0.00479759164608554	0.00468880258295501	19841559	8797233	1299	577	0	False	545	549	27			{X=0,Y=0,Width=0,Height=0}
-68	598	550	0.231939305977631	0.232142243702976	0.231937132829786	0.232227054245823	0.00410298849754429	0.00429371111049635	19744985	8778156	1299	577	0	False	598	550	27			{X=0,Y=0,Width=0,Height=0}
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-70	704	550	0.230612675571992	0.230452591316453	0.230487525749599	0.230350194552529	0.00387608307255269	0.00378172089950103	19632049	8714264	1299	577	0	False	704	550	27			{X=0,Y=0,Width=0,Height=0}
-71	225	601	0.231825444777288	0.231816118472421	0.231708247501335	0.231723506523232	0.00497581305575875	0.00499008365405544	19735292	8765824	1299	577	0	False	225	601	27			{X=0,Y=0,Width=0,Height=0}
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-73	332	601	0.232523788774023	0.232736155511912	0.23237964446479	0.232593270771344	0.00400235181527279	0.00333904507020638	19794742	8800614	1299	577	0	False	332	601	27			{X=0,Y=0,Width=0,Height=0}
-74	385	601	0.233763493265855	0.233184088463188	0.233539330128939	0.233218890669108	0.00482433273950998	0.00396062868778427	19900278	8817552	1299	577	0	False	385	601	27			{X=0,Y=0,Width=0,Height=0}
-75	438	602	0.233194610146968	0.233091238504991	0.233295185778592	0.233051041428244	0.00422508508789747	0.00411940676552212	19851849	8814041	1299	577	0	False	438	602	27			{X=0,Y=0,Width=0,Height=0}
-76	491	602	0.233326044477993	0.232980564316711	0.233188372625315	0.232959487296864	0.00534161165519334	0.00546503498616257	19863038	8809856	1299	577	0	False	491	602	27			{X=0,Y=0,Width=0,Height=0}
-77	544	602	0.232475650612566	0.232450174467214	0.23237964446479	0.232532234683757	0.0042512606098518	0.00424797160677589	19790644	8789800	1299	577	0	False	544	602	27			{X=0,Y=0,Width=0,Height=0}
-78	598	602	0.23180459430472	0.231597123740486	0.231754024567025	0.231677729457542	0.00401844976341071	0.00414957401455178	19733517	8757543	1299	577	0	False	598	602	27			{X=0,Y=0,Width=0,Height=0}
-79	651	602	0.231104617510415	0.231367709503131	0.23089951934081	0.231357289997711	0.00361636789893566	0.00323007543183913	19673928	8748868	1299	577	0	False	651	602	27			{X=0,Y=0,Width=0,Height=0}
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-81	227	656	0.237967747314356	0.980028262805177	0.237613488975357	1	0.00631762091152547	0.0777810485452699	20258186	48105388	1299	749	89	True	225	653	31			{X=0,Y=0,Width=0,Height=0}
-82	278	654	0.233511161434167	0.232729306141598	0.233295185778592	0.232669565880827	0.00467041195459207	0.00394289501411022	19878797	8800355	1299	577	0	False	278	654	27			{X=0,Y=0,Width=0,Height=0}
-83	331	654	0.232253684116985	0.231942739264174	0.232227054245823	0.231708247501335	0.00342548129794164	0.00350753332007652	19771748	8770612	1299	577	0	False	331	654	27			{X=0,Y=0,Width=0,Height=0}
-84	385	654	0.232376543324081	0.232579519139825	0.232318608377203	0.232593270771344	0.00401104888553049	0.00406917466283049	19782207	8794691	1299	577	0	False	385	654	27			{X=0,Y=0,Width=0,Height=0}
-85	438	654	0.232715014037654	0.232993363912202	0.23260852979324	0.232852674143587	0.00480402367858593	0.00480490539158847	19811021	8810340	1299	577	0	False	438	654	27			{X=0,Y=0,Width=0,Height=0}
-86	491	654	0.232462588232005	0.232785978730722	0.232455939574273	0.232684824902724	0.00465428047976449	0.004525459000888	19789532	8802498	1299	577	0	False	491	654	27			{X=0,Y=0,Width=0,Height=0}
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-88	597	655	0.231219160021973	0.230909277710099	0.231235217822538	0.231143663691157	0.00379610228378077	0.00334762757971261	19683679	8731533	1299	577	0	False	597	655	27			{X=0,Y=0,Width=0,Height=0}
-89	650	655	0.231138929752878	0.231603259083779	0.231036850537881	0.231708247501335	0.00350293004626227	0.00363562988665873	19676849	8757775	1299	577	0	False	650	655	27			{X=0,Y=0,Width=0,Height=0}
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-91	225	711	0.238222346267851	0.968247218157055	0.23736934462501	1	0.00748762946502839	0.108370305229263	20279860	47527107	1299	749	87	True	225	706	31			{X=0,Y=0,Width=0,Height=0}
-92	278	706	0.232969507270442	0.232869572783088	0.232593270771344	0.232883192187381	0.00494614169591609	0.00375403689791968	19832686	8805659	1299	577	0	False	278	706	27			{X=0,Y=0,Width=0,Height=0}
-93	331	706	0.231531188812306	0.231753231203668	0.231479362172885	0.231921873807889	0.00414579943679099	0.00448774106167316	19710242	8763446	1299	577	0	False	331	706	27			{X=0,Y=0,Width=0,Height=0}
-94	384	707	0.231892706639783	0.231594452750518	0.231723506523232	0.231250476844434	0.00479846328392011	0.00501447192155902	19741018	8757442	1299	577	0	False	384	707	27			{X=0,Y=0,Width=0,Height=0}
-95	438	707	0.231976378705195	0.232612734619032	0.231845578698405	0.232593270771344	0.00461300150672229	0.00431468651443572	19748141	8795947	1299	577	0	False	438	707	27			{X=0,Y=0,Width=0,Height=0}
-96	491	707	0.231695701977559	0.233085605625158	0.231784542610819	0.233035782406348	0.0048776322082446	0.00513721503508373	19724247	8813828	1299	577	0	False	491	707	27			{X=0,Y=0,Width=0,Height=0}
-97	544	707	0.23134096202201	0.231391483958391	0.231342030975814	0.231082627603571	0.00420170190031827	0.00459126145511638	19694048	8749767	1299	577	0	False	544	707	27			{X=0,Y=0,Width=0,Height=0}
-98	597	707	0.230746682440196	0.231264440039515	0.23067063401236	0.231433585107195	0.00388768356141643	0.00355051075555696	19643457	8744963	1299	577	0	False	597	707	27			{X=0,Y=0,Width=0,Height=0}
-99	650	708	0.231011183899817	0.231283348532853	0.23085374227512	0.231372549019608	0.00435360556598995	0.00423666832444796	19665974	8745678	1299	577	0	False	650	708	27			{X=0,Y=0,Width=0,Height=0}
-100	703	710	0.234496219985525	0.961848794435366	0.234485389486534	1	0.00506929297229224	0.110539406432211	19962655	54272929	1299	861	83	True	703	708	33			{X=0,Y=0,Width=0,Height=0}
diff --git a/example_data/record_time/220307_SN0801_CHECK-01_SL1,11,9,14_MS_1_1_A01_2.csv b/example_data/record_time/220307_SN0801_CHECK-01_SL1,11,9,14_MS_1_1_A01_2.csv
deleted file mode 100644
index 97868a4..0000000
--- a/example_data/record_time/220307_SN0801_CHECK-01_SL1,11,9,14_MS_1_1_A01_2.csv
+++ /dev/null
@@ -1,101 +0,0 @@
- ID 	Pos.X	Pos.Y	Bkg.Mean	Spot.Mean	Bkg.Median	Spot.Median	Bkg.StdDev	Spot.StdDev	Bkg.Sum	Spot.Sum	Bkg.Area	Spot.Area	Spot.Sat. (%)	Found	Pos.Nom.X	Pos.Nom.Y	Dia.	Id	Name	Rect.	Contour
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-2	280	233	0.023375000800247	0.0231522468248607	0.0234073395895323	0.0231631952391852	0.00166186467828235	0.00174650664682659	1989913	875472	1299	577	0	False	280	233	27			{X=0,Y=0,Width=0,Height=0}
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-5	439	234	0.0235041797562116	0.0229467657154372	0.023270008392462	0.0228732738231479	0.00283478079160566	0.00179305956208973	2000910	867702	1299	577	0	False	439	234	27			{X=0,Y=0,Width=0,Height=0}
-6	493	234	0.0230780900708699	0.0230060035127485	0.0231021591515984	0.0229037918669413	0.00226693917491101	0.00248134131437587	1964637	869942	1299	577	0	False	493	234	27			{X=0,Y=0,Width=0,Height=0}
-7	546	234	0.0232827536109054	0.0231199833816822	0.0233615625238422	0.0231937132829786	0.00215447398331304	0.00215770908687416	1982060	874252	1299	577	0	False	546	234	27			{X=0,Y=0,Width=0,Height=0}
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diff --git a/example_data/record_time/220307_SN0801_CHECK-01_SL1,11,9,14_MS_1_1_A01_3.csv b/example_data/record_time/220307_SN0801_CHECK-01_SL1,11,9,14_MS_1_1_A01_3.csv
deleted file mode 100644
index 87a3a19..0000000
--- a/example_data/record_time/220307_SN0801_CHECK-01_SL1,11,9,14_MS_1_1_A01_3.csv
+++ /dev/null
@@ -1,101 +0,0 @@
- ID 	Pos.X	Pos.Y	Bkg.Mean	Spot.Mean	Bkg.Median	Spot.Median	Bkg.StdDev	Spot.StdDev	Bkg.Sum	Spot.Sum	Bkg.Area	Spot.Area	Spot.Sat. (%)	Found	Pos.Nom.X	Pos.Nom.Y	Dia.	Id	Name	Rect.	Contour
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diff --git a/example_data/record_time/220307_SN0801_CHECK-01_SL1,11,9,14_MS_1_1_A01_4.csv b/example_data/record_time/220307_SN0801_CHECK-01_SL1,11,9,14_MS_1_1_A01_4.csv
deleted file mode 100644
index 98e6db2..0000000
--- a/example_data/record_time/220307_SN0801_CHECK-01_SL1,11,9,14_MS_1_1_A01_4.csv
+++ /dev/null
@@ -1,101 +0,0 @@
- ID 	Pos.X	Pos.Y	Bkg.Mean	Spot.Mean	Bkg.Median	Spot.Median	Bkg.StdDev	Spot.StdDev	Bkg.Sum	Spot.Sum	Bkg.Area	Spot.Area	Spot.Sat. (%)	Found	Pos.Nom.X	Pos.Nom.Y	Dia.	Id	Name	Rect.	Contour
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diff --git a/example_data/record_time/220307_SN0801_CHECK-01_SL1,11,9,14_MS_1_1_A02_1.csv b/example_data/record_time/220307_SN0801_CHECK-01_SL1,11,9,14_MS_1_1_A02_1.csv
deleted file mode 100644
index 7f961dd..0000000
--- a/example_data/record_time/220307_SN0801_CHECK-01_SL1,11,9,14_MS_1_1_A02_1.csv
+++ /dev/null
@@ -1,101 +0,0 @@
- ID 	Pos.X	Pos.Y	Bkg.Mean	Spot.Mean	Bkg.Median	Spot.Median	Bkg.StdDev	Spot.StdDev	Bkg.Sum	Spot.Sum	Bkg.Area	Spot.Area	Spot.Sat. (%)	Found	Pos.Nom.X	Pos.Nom.Y	Dia.	Id	Name	Rect.	Contour
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-83	360	634	0.233411537142368	0.233809549688281	0.233340962844282	0.233691920347906	0.0037890531923281	0.00385827492745188	22073030	8841203	1443	577	0	False	360	634	26			{X=0,Y=0,Width=0,Height=0}
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-85	465	634	0.23424256695028	0.24066986841672	0.234241245136187	0.23598077363241	0.004806124836672	0.0202252374790453	22151618	9100617	1443	577	0	False	465	634	26			{X=0,Y=0,Width=0,Height=0}
-86	518	634	0.23426983861866	0.234654481663323	0.234241245136187	0.234637979705501	0.00456259290093584	0.00470205135123672	22154197	8873153	1443	577	0	False	518	634	26			{X=0,Y=0,Width=0,Height=0}
-87	571	634	0.233675212617762	0.233724157345639	0.233524071107042	0.233539330128939	0.00457811867434722	0.00447938276836769	22097965	8837974	1443	577	0	False	571	634	26			{X=0,Y=0,Width=0,Height=0}
-88	623	634	0.232756752738442	0.232401541293439	0.232822156099794	0.23251697566186	0.00360259014336412	0.00369457004989902	22011109	8787961	1443	577	0	False	623	634	26			{X=0,Y=0,Width=0,Height=0}
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-90	729	634	0.23186575486873	0.231713087017812	0.231906614785992	0.231708247501335	0.0040009806542118	0.00388172781631649	21926850	8761928	1443	577	0	False	729	634	26			{X=0,Y=0,Width=0,Height=0}
-91	253	690	0.243771091196131	0.973385230305803	0.24115358205539	1	0.0141580900618744	0.0864309408732952	23052702	47779310	1443	749	82	True	254	686	31			{X=0,Y=0,Width=0,Height=0}
-92	307	686	0.234406556493991	0.233271279096105	0.23395132372015	0.233188372625315	0.0047617307961239	0.00342519695131413	22167126	8820849	1443	577	0	False	307	686	26			{X=0,Y=0,Width=0,Height=0}
-93	360	686	0.232832794059619	0.232884778914094	0.232761120012207	0.232990005340658	0.00424345176962039	0.00398270435338114	22018300	8806234	1443	577	0	False	360	686	26			{X=0,Y=0,Width=0,Height=0}
-94	412	686	0.233497148397583	0.232603029140633	0.233554589150835	0.232455939574273	0.0040611110423329	0.00379170979620769	22081126	8795580	1443	577	0	False	412	686	26			{X=0,Y=0,Width=0,Height=0}
-95	465	686	0.23394244112944	0.234123536459476	0.23395132372015	0.234103913939117	0.00451740833313688	0.00450137133471654	22123236	8853076	1443	577	0	False	465	686	26			{X=0,Y=0,Width=0,Height=0}
-96	518	686	0.233421307992148	0.233586217903328	0.233447775997559	0.233401998931868	0.00434136516663539	0.00441379712653287	22073954	8832758	1443	577	0	False	518	686	26			{X=0,Y=0,Width=0,Height=0}
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-99	676	686	0.232913371846766	0.231686430009022	0.232776379034104	0.231662470435645	0.00403128930907614	0.00386519240482842	22025920	8760920	1443	577	0	False	676	686	26			{X=0,Y=0,Width=0,Height=0}
-100	728	690	0.236375932599325	0.944805229041729	0.235996032654307	1	0.00510610476815883	0.130293302005745	22353364	53311235	1443	861	76	True	729	686	32			{X=0,Y=0,Width=0,Height=0}
diff --git a/example_data/record_time/220307_SN0801_CHECK-01_SL1,11,9,14_MS_1_1_A02_2.csv b/example_data/record_time/220307_SN0801_CHECK-01_SL1,11,9,14_MS_1_1_A02_2.csv
deleted file mode 100644
index 4b8cad7..0000000
--- a/example_data/record_time/220307_SN0801_CHECK-01_SL1,11,9,14_MS_1_1_A02_2.csv
+++ /dev/null
@@ -1,101 +0,0 @@
- ID 	Pos.X	Pos.Y	Bkg.Mean	Spot.Mean	Bkg.Median	Spot.Median	Bkg.StdDev	Spot.StdDev	Bkg.Sum	Spot.Sum	Bkg.Area	Spot.Area	Spot.Sat. (%)	Found	Pos.Nom.X	Pos.Nom.Y	Dia.	Id	Name	Rect.	Contour
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-3	360	217	0.023371428544237	0.0234825239903162	0.0234683756771191	0.0234988937209125	0.00159872907065476	0.00164075915776558	2210166	887961	1443	577	0	False	360	217	26			{X=0,Y=0,Width=0,Height=0}
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-89	676	634	0.0234636594444331	0.0235936213057201	0.023422598611429	0.0236057068741894	0.00131589513127822	0.00142601365064536	2218888	892162	1443	577	0	False	676	634	26			{X=0,Y=0,Width=0,Height=0}
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-93	360	686	0.0236069652412065	0.0236414346706927	0.023575188830396	0.0236514839398795	0.00165037318934321	0.00165540588750474	2232440	893970	1443	577	0	False	360	686	26			{X=0,Y=0,Width=0,Height=0}
-94	412	686	0.0235924464352022	0.023452032391968	0.0236057068741894	0.0233920805676356	0.00159375478520744	0.00160843272410403	2231067	886808	1443	577	0	False	412	686	26			{X=0,Y=0,Width=0,Height=0}
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-96	518	686	0.0235655343002562	0.0237665480720675	0.0235446707866026	0.0236514839398795	0.00173286973234385	0.00191918602553774	2228522	898701	1443	577	0	False	518	686	26			{X=0,Y=0,Width=0,Height=0}
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-99	676	686	0.0234745829161027	0.0234616320885859	0.0234378576333257	0.0234073395895323	0.0015379431587551	0.00151820942827445	2219921	887171	1443	577	0	False	676	686	26			{X=0,Y=0,Width=0,Height=0}
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diff --git a/example_data/record_time/220307_SN0801_CHECK-01_SL1,11,9,14_MS_1_1_A02_3.csv b/example_data/record_time/220307_SN0801_CHECK-01_SL1,11,9,14_MS_1_1_A02_3.csv
deleted file mode 100644
index 18c9eee..0000000
--- a/example_data/record_time/220307_SN0801_CHECK-01_SL1,11,9,14_MS_1_1_A02_3.csv
+++ /dev/null
@@ -1,101 +0,0 @@
- ID 	Pos.X	Pos.Y	Bkg.Mean	Spot.Mean	Bkg.Median	Spot.Median	Bkg.StdDev	Spot.StdDev	Bkg.Sum	Spot.Sum	Bkg.Area	Spot.Area	Spot.Sat. (%)	Found	Pos.Nom.X	Pos.Nom.Y	Dia.	Id	Name	Rect.	Contour
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-3	360	217	0.315170804024089	0.31471801420094	0.314961470969711	0.315007248035401	0.00435817690742111	0.0042603982656554	29804759	11900651	1443	577	0	False	360	217	26			{X=0,Y=0,Width=0,Height=0}
-4	413	217	0.315052464651915	0.315232298774293	0.314854657816434	0.315068284122988	0.00480825402508554	0.0043627163779978	29793568	11920098	1443	577	0	False	413	217	26			{X=0,Y=0,Width=0,Height=0}
-5	466	217	0.316944731410284	0.315400386024164	0.315556572823682	0.315526054779889	0.0120562818414038	0.00581734770259926	29972514	11926454	1443	577	0	False	466	217	26			{X=0,Y=0,Width=0,Height=0}
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-92	307	686	0.316043211900387	0.316348084999363	0.316182192721447	0.31625848783093	0.0050264593639065	0.00500533547172193	29887260	11962290	1443	577	0	False	307	686	26			{X=0,Y=0,Width=0,Height=0}
-93	360	686	0.316065249184956	0.315707920106723	0.31630426489662	0.315709163042649	0.00564919565424752	0.00582214013675897	29889344	11938083	1443	577	0	False	360	686	26			{X=0,Y=0,Width=0,Height=0}
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diff --git a/example_data/record_time/220307_SN0801_CHECK-01_SL1,11,9,14_MS_1_1_A02_4.csv b/example_data/record_time/220307_SN0801_CHECK-01_SL1,11,9,14_MS_1_1_A02_4.csv
deleted file mode 100644
index f77541c..0000000
--- a/example_data/record_time/220307_SN0801_CHECK-01_SL1,11,9,14_MS_1_1_A02_4.csv
+++ /dev/null
@@ -1,101 +0,0 @@
- ID 	Pos.X	Pos.Y	Bkg.Mean	Spot.Mean	Bkg.Median	Spot.Median	Bkg.StdDev	Spot.StdDev	Bkg.Sum	Spot.Sum	Bkg.Area	Spot.Area	Spot.Sat. (%)	Found	Pos.Nom.X	Pos.Nom.Y	Dia.	Id	Name	Rect.	Contour
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-93	360	686	0.0332384640922064	0.0332482715587567	0.0332188906691081	0.0331883726253147	0.00213855139718242	0.00210242290330983	3143262	1257240	1443	577	0	False	360	686	26			{X=0,Y=0,Width=0,Height=0}
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diff --git a/example_data/record_time/220307_SN0801_CHECK-01_SL1,11,9,14_MS_1_1_A03_1.csv b/example_data/record_time/220307_SN0801_CHECK-01_SL1,11,9,14_MS_1_1_A03_1.csv
deleted file mode 100644
index b73308b..0000000
--- a/example_data/record_time/220307_SN0801_CHECK-01_SL1,11,9,14_MS_1_1_A03_1.csv
+++ /dev/null
@@ -1,101 +0,0 @@
- ID 	Pos.X	Pos.Y	Bkg.Mean	Spot.Mean	Bkg.Median	Spot.Median	Bkg.StdDev	Spot.StdDev	Bkg.Sum	Spot.Sum	Bkg.Area	Spot.Area	Spot.Sat. (%)	Found	Pos.Nom.X	Pos.Nom.Y	Dia.	Id	Name	Rect.	Contour
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diff --git a/example_data/record_time/220307_SN0801_CHECK-01_SL1,11,9,14_MS_1_1_A03_2.csv b/example_data/record_time/220307_SN0801_CHECK-01_SL1,11,9,14_MS_1_1_A03_2.csv
deleted file mode 100644
index 4ebf23a..0000000
--- a/example_data/record_time/220307_SN0801_CHECK-01_SL1,11,9,14_MS_1_1_A03_2.csv
+++ /dev/null
@@ -1,101 +0,0 @@
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-86	370	649	0.0235282379937908	0.0233914194315049	0.0234988937209125	0.0234683756771191	0.00163473222796657	0.00159590944612649	2084680	884516	1352	577	0	False	370	649	27			{X=0,Y=0,Width=0,Height=0}
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-88	476	650	0.0237575070550404	0.0236908612078243	0.023773556115053	0.0236362249179828	0.00173260964386086	0.00208889958834703	2104994	895839	1352	577	0	False	476	650	27			{X=0,Y=0,Width=0,Height=0}
-89	530	650	0.0236932543836958	0.0236135611714222	0.0236667429617761	0.0236362249179828	0.00160609426185989	0.00158885925661299	2099301	892916	1352	577	0	False	530	650	27			{X=0,Y=0,Width=0,Height=0}
-90	583	650	0.0236771714649067	0.0235908709794163	0.0236362249179828	0.0235141527428092	0.00143687973974667	0.0014595961215575	2097876	892058	1352	577	0	False	583	650	27			{X=0,Y=0,Width=0,Height=0}
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-92	156	700	0.0236505697529167	0.0236439998788799	0.0236209658960861	0.0236972610055695	0.00185126746055751	0.00165679701869091	2095519	894067	1352	577	0	False	156	700	27			{X=0,Y=0,Width=0,Height=0}
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-94	263	701	0.023496839621811	0.0233298808804588	0.0235599298084993	0.0233768215457389	0.00190128740639338	0.00190349070120469	2081898	882189	1352	577	0	False	263	701	27			{X=0,Y=0,Width=0,Height=0}
-95	316	701	0.023531432005031	0.0233922127948618	0.0235141527428092	0.0233310444800488	0.00157574042011351	0.00160146093365819	2084963	884546	1352	577	0	False	316	701	27			{X=0,Y=0,Width=0,Height=0}
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diff --git a/example_data/record_time/220307_SN0801_CHECK-01_SL1,11,9,14_MS_1_1_A03_3.csv b/example_data/record_time/220307_SN0801_CHECK-01_SL1,11,9,14_MS_1_1_A03_3.csv
deleted file mode 100644
index 3a1c17a..0000000
--- a/example_data/record_time/220307_SN0801_CHECK-01_SL1,11,9,14_MS_1_1_A03_3.csv
+++ /dev/null
@@ -1,101 +0,0 @@
- ID 	Pos.X	Pos.Y	Bkg.Mean	Spot.Mean	Bkg.Median	Spot.Median	Bkg.StdDev	Spot.StdDev	Bkg.Sum	Spot.Sum	Bkg.Area	Spot.Area	Spot.Sat. (%)	Found	Pos.Nom.X	Pos.Nom.Y	Dia.	Id	Name	Rect.	Contour
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diff --git a/example_data/record_time/220307_SN0801_CHECK-01_SL1,11,9,14_MS_1_1_A03_4.csv b/example_data/record_time/220307_SN0801_CHECK-01_SL1,11,9,14_MS_1_1_A03_4.csv
deleted file mode 100644
index 4a5ad6f..0000000
--- a/example_data/record_time/220307_SN0801_CHECK-01_SL1,11,9,14_MS_1_1_A03_4.csv
+++ /dev/null
@@ -1,101 +0,0 @@
- ID 	Pos.X	Pos.Y	Bkg.Mean	Spot.Mean	Bkg.Median	Spot.Median	Bkg.StdDev	Spot.StdDev	Bkg.Sum	Spot.Sum	Bkg.Area	Spot.Area	Spot.Sat. (%)	Found	Pos.Nom.X	Pos.Nom.Y	Dia.	Id	Name	Rect.	Contour
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-92	156	700	0.0336243720889917	0.0336242993444571	0.0336461432822156	0.0335698481727321	0.00227820138548044	0.00224735113928469	2979231	1271459	1352	577	0	False	156	700	27			{X=0,Y=0,Width=0,Height=0}
-93	209	701	0.0338394768954482	0.0336721127094297	0.033829251544976	0.0334630350194553	0.00253270345682552	0.00261726721668795	2998290	1273267	1352	577	0	False	209	701	27			{X=0,Y=0,Width=0,Height=0}
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diff --git a/example_data/record_time/220307_SN0801_CHECK-01_SL1,11,9,14_MS_1_1_A04_1.csv b/example_data/record_time/220307_SN0801_CHECK-01_SL1,11,9,14_MS_1_1_A04_1.csv
deleted file mode 100644
index 44f84fe..0000000
--- a/example_data/record_time/220307_SN0801_CHECK-01_SL1,11,9,14_MS_1_1_A04_1.csv
+++ /dev/null
@@ -1,101 +0,0 @@
- ID 	Pos.X	Pos.Y	Bkg.Mean	Spot.Mean	Bkg.Median	Spot.Median	Bkg.StdDev	Spot.StdDev	Bkg.Sum	Spot.Sum	Bkg.Area	Spot.Area	Spot.Sat. (%)	Found	Pos.Nom.X	Pos.Nom.Y	Dia.	Id	Name	Rect.	Contour
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-93	345	667	0.236115609244472	0.236833797913692	0.236163881895171	0.236835278858625	0.0037210687412987	0.0035279401762037	22328746	8955561	1443	577	0	False	345	667	26			{X=0,Y=0,Width=0,Height=0}
-94	397	667	0.236493732671348	0.23652761254884	0.236469062333104	0.236377508201724	0.003984520146957	0.00397664271608808	22364504	8943983	1443	577	0	False	397	667	26			{X=0,Y=0,Width=0,Height=0}
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diff --git a/example_data/record_time/220307_SN0801_CHECK-01_SL1,11,9,14_MS_1_1_A04_2.csv b/example_data/record_time/220307_SN0801_CHECK-01_SL1,11,9,14_MS_1_1_A04_2.csv
deleted file mode 100644
index 603ca40..0000000
--- a/example_data/record_time/220307_SN0801_CHECK-01_SL1,11,9,14_MS_1_1_A04_2.csv
+++ /dev/null
@@ -1,101 +0,0 @@
- ID 	Pos.X	Pos.Y	Bkg.Mean	Spot.Mean	Bkg.Median	Spot.Median	Bkg.StdDev	Spot.StdDev	Bkg.Sum	Spot.Sum	Bkg.Area	Spot.Area	Spot.Sat. (%)	Found	Pos.Nom.X	Pos.Nom.Y	Dia.	Id	Name	Rect.	Contour
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diff --git a/example_data/record_time/220307_SN0801_CHECK-01_SL1,11,9,14_MS_1_1_A04_3.csv b/example_data/record_time/220307_SN0801_CHECK-01_SL1,11,9,14_MS_1_1_A04_3.csv
deleted file mode 100644
index 7881fe3..0000000
--- a/example_data/record_time/220307_SN0801_CHECK-01_SL1,11,9,14_MS_1_1_A04_3.csv
+++ /dev/null
@@ -1,101 +0,0 @@
- ID 	Pos.X	Pos.Y	Bkg.Mean	Spot.Mean	Bkg.Median	Spot.Median	Bkg.StdDev	Spot.StdDev	Bkg.Sum	Spot.Sum	Bkg.Area	Spot.Area	Spot.Sat. (%)	Found	Pos.Nom.X	Pos.Nom.Y	Dia.	Id	Name	Rect.	Contour
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-2	294	197	0.317066666116792	0.31761474248946	0.316762035553521	0.317387655451286	0.00507276757442804	0.00542910980915898	29984045	12010187	1443	577	0	False	294	197	26			{X=0,Y=0,Width=0,Height=0}
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-92	292	667	0.317523305300829	0.317402914473182	0.317433432516976	0.317402914473182	0.00466915715679578	0.00422560607617782	30027228	12002177	1443	577	0	False	292	667	26			{X=0,Y=0,Width=0,Height=0}
-93	345	667	0.31753238880728	0.317568595187537	0.317418173495079	0.317586022735943	0.00532708547057885	0.00547851079645445	30028087	12008442	1443	577	0	False	345	667	26			{X=0,Y=0,Width=0,Height=0}
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-99	661	668	0.31994093500159	0.318937332096215	0.31981383993286	0.318654154268711	0.00413016147813311	0.00392997951360022	30255856	12060199	1443	577	0	False	661	668	26			{X=0,Y=0,Width=0,Height=0}
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diff --git a/example_data/record_time/220307_SN0801_CHECK-01_SL1,11,9,14_MS_1_1_A04_4.csv b/example_data/record_time/220307_SN0801_CHECK-01_SL1,11,9,14_MS_1_1_A04_4.csv
deleted file mode 100644
index f575ed1..0000000
--- a/example_data/record_time/220307_SN0801_CHECK-01_SL1,11,9,14_MS_1_1_A04_4.csv
+++ /dev/null
@@ -1,101 +0,0 @@
- ID 	Pos.X	Pos.Y	Bkg.Mean	Spot.Mean	Bkg.Median	Spot.Median	Bkg.StdDev	Spot.StdDev	Bkg.Sum	Spot.Sum	Bkg.Area	Spot.Area	Spot.Sat. (%)	Found	Pos.Nom.X	Pos.Nom.Y	Dia.	Id	Name	Rect.	Contour
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diff --git a/example_data/record_time/220307_SN0801_CHECK-01_SL1,11,9,14_MS_1_1_B01_1.csv b/example_data/record_time/220307_SN0801_CHECK-01_SL1,11,9,14_MS_1_1_B01_1.csv
deleted file mode 100644
index 158387b..0000000
--- a/example_data/record_time/220307_SN0801_CHECK-01_SL1,11,9,14_MS_1_1_B01_1.csv
+++ /dev/null
@@ -1,101 +0,0 @@
- ID 	Pos.X	Pos.Y	Bkg.Mean	Spot.Mean	Bkg.Median	Spot.Median	Bkg.StdDev	Spot.StdDev	Bkg.Sum	Spot.Sum	Bkg.Area	Spot.Area	Spot.Sat. (%)	Found	Pos.Nom.X	Pos.Nom.Y	Dia.	Id	Name	Rect.	Contour
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diff --git a/example_data/record_time/220307_SN0801_CHECK-01_SL1,11,9,14_MS_1_1_B01_2.csv b/example_data/record_time/220307_SN0801_CHECK-01_SL1,11,9,14_MS_1_1_B01_2.csv
deleted file mode 100644
index a1b3c3d..0000000
--- a/example_data/record_time/220307_SN0801_CHECK-01_SL1,11,9,14_MS_1_1_B01_2.csv
+++ /dev/null
@@ -1,101 +0,0 @@
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diff --git a/example_data/record_time/220307_SN0801_CHECK-01_SL1,11,9,14_MS_1_1_B01_3.csv b/example_data/record_time/220307_SN0801_CHECK-01_SL1,11,9,14_MS_1_1_B01_3.csv
deleted file mode 100644
index 4678e81..0000000
--- a/example_data/record_time/220307_SN0801_CHECK-01_SL1,11,9,14_MS_1_1_B01_3.csv
+++ /dev/null
@@ -1,101 +0,0 @@
- ID 	Pos.X	Pos.Y	Bkg.Mean	Spot.Mean	Bkg.Median	Spot.Median	Bkg.StdDev	Spot.StdDev	Bkg.Sum	Spot.Sum	Bkg.Area	Spot.Area	Spot.Sat. (%)	Found	Pos.Nom.X	Pos.Nom.Y	Dia.	Id	Name	Rect.	Contour
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diff --git a/example_data/record_time/220307_SN0801_CHECK-01_SL1,11,9,14_MS_1_1_B01_4.csv b/example_data/record_time/220307_SN0801_CHECK-01_SL1,11,9,14_MS_1_1_B01_4.csv
deleted file mode 100644
index 13f49e5..0000000
--- a/example_data/record_time/220307_SN0801_CHECK-01_SL1,11,9,14_MS_1_1_B01_4.csv
+++ /dev/null
@@ -1,101 +0,0 @@
- ID 	Pos.X	Pos.Y	Bkg.Mean	Spot.Mean	Bkg.Median	Spot.Median	Bkg.StdDev	Spot.StdDev	Bkg.Sum	Spot.Sum	Bkg.Area	Spot.Area	Spot.Sat. (%)	Found	Pos.Nom.X	Pos.Nom.Y	Dia.	Id	Name	Rect.	Contour
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-86	492	654	0.0343806912358068	0.0345039806345294	0.034378576333257	0.0344701304646372	0.00188672075470468	0.00186012981952982	3251279	1304723	1443	577	0	False	492	654	26			{X=0,Y=0,Width=0,Height=0}
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-88	598	654	0.0342891371044266	0.0345770229542498	0.0343175402456703	0.0345616845960174	0.00164234401525303	0.001691752307425	3242621	1307485	1443	577	0	False	598	654	26			{X=0,Y=0,Width=0,Height=0}
-89	651	654	0.0342082209328719	0.0343541142964209	0.0342107270923934	0.0342717631799802	0.00158592972145545	0.0016349788281372	3234969	1299056	1443	577	0	False	651	654	26			{X=0,Y=0,Width=0,Height=0}
-90	704	654	0.0341783796578944	0.0344839878779368	0.0341954680704967	0.0344701304646372	0.00170305039796281	0.00176693808161058	3232147	1303967	1443	577	0	False	704	654	26			{X=0,Y=0,Width=0,Height=0}
-91	229	711	0.0338840486700409	0.0414683986980734	0.0339055466544594	0.0416876478217746	0.00260056542367393	0.00414798988259963	3204313	2035506	1443	749	0	True	227	706	31			{X=0,Y=0,Width=0,Height=0}
-92	280	706	0.0339345525429298	0.0338543747179428	0.033829251544976	0.0338139925230793	0.00217271804240645	0.00197653314107559	3209089	1280159	1443	577	0	False	280	706	26			{X=0,Y=0,Width=0,Height=0}
-93	333	706	0.0341572094833711	0.0341398004082912	0.0341649500267033	0.0341496910048066	0.0021832278387283	0.00236893717385299	3230145	1290952	1443	577	0	False	333	706	26			{X=0,Y=0,Width=0,Height=0}
-94	386	706	0.0341185173412228	0.0339931604145006	0.0341649500267033	0.0339818417639429	0.00231139170069106	0.00222818056785802	3226486	1285407	1443	577	0	False	386	706	26			{X=0,Y=0,Width=0,Height=0}
-95	439	706	0.0341792679169653	0.0342243464966859	0.0341344319829099	0.0341802090486	0.00224370774163061	0.00218138762064366	3232231	1294149	1443	577	0	False	439	706	26			{X=0,Y=0,Width=0,Height=0}
-96	492	706	0.0341097299211284	0.0342113617830789	0.0340886549172198	0.0342412451361868	0.00202066987092569	0.00207613574409338	3225655	1293658	1443	577	0	False	492	706	26			{X=0,Y=0,Width=0,Height=0}
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-99	651	707	0.0340566458671288	0.0341650822539294	0.0340123598077363	0.0341496910048066	0.00167462128861343	0.00161157986624482	3220635	1291908	1443	577	0	False	651	707	26			{X=0,Y=0,Width=0,Height=0}
-100	705	710	0.0341290812794589	0.0411500168633583	0.0341039139391165	0.0414587624933242	0.00176522476636816	0.00334150388153267	3227485	2019878	1443	749	0	True	704	707	31			{X=0,Y=0,Width=0,Height=0}
diff --git a/example_data/record_time/220307_SN0801_CHECK-01_SL1,11,9,14_MS_1_1_B02_1.csv b/example_data/record_time/220307_SN0801_CHECK-01_SL1,11,9,14_MS_1_1_B02_1.csv
deleted file mode 100644
index f83d6d0..0000000
--- a/example_data/record_time/220307_SN0801_CHECK-01_SL1,11,9,14_MS_1_1_B02_1.csv
+++ /dev/null
@@ -1,101 +0,0 @@
- ID 	Pos.X	Pos.Y	Bkg.Mean	Spot.Mean	Bkg.Median	Spot.Median	Bkg.StdDev	Spot.StdDev	Bkg.Sum	Spot.Sum	Bkg.Area	Spot.Area	Spot.Sat. (%)	Found	Pos.Nom.X	Pos.Nom.Y	Dia.	Id	Name	Rect.	Contour
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-92	305	689	0.235855708870129	0.234379713487402	0.234897383077745	0.23427176317998	0.00607173369783603	0.0036741825018501	22304168	8862763	1443	577	0	False	305	689	26			{X=0,Y=0,Width=0,Height=0}
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diff --git a/example_data/record_time/220307_SN0801_CHECK-01_SL1,11,9,14_MS_1_1_B02_2.csv b/example_data/record_time/220307_SN0801_CHECK-01_SL1,11,9,14_MS_1_1_B02_2.csv
deleted file mode 100644
index 27ef01e..0000000
--- a/example_data/record_time/220307_SN0801_CHECK-01_SL1,11,9,14_MS_1_1_B02_2.csv
+++ /dev/null
@@ -1,101 +0,0 @@
- ID 	Pos.X	Pos.Y	Bkg.Mean	Spot.Mean	Bkg.Median	Spot.Median	Bkg.StdDev	Spot.StdDev	Bkg.Sum	Spot.Sum	Bkg.Area	Spot.Area	Spot.Sat. (%)	Found	Pos.Nom.X	Pos.Nom.Y	Dia.	Id	Name	Rect.	Contour
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diff --git a/example_data/record_time/220307_SN0801_CHECK-01_SL1,11,9,14_MS_1_1_B02_3.csv b/example_data/record_time/220307_SN0801_CHECK-01_SL1,11,9,14_MS_1_1_B02_3.csv
deleted file mode 100644
index 81c6c41..0000000
--- a/example_data/record_time/220307_SN0801_CHECK-01_SL1,11,9,14_MS_1_1_B02_3.csv
+++ /dev/null
@@ -1,101 +0,0 @@
- ID 	Pos.X	Pos.Y	Bkg.Mean	Spot.Mean	Bkg.Median	Spot.Median	Bkg.StdDev	Spot.StdDev	Bkg.Sum	Spot.Sum	Bkg.Area	Spot.Area	Spot.Sat. (%)	Found	Pos.Nom.X	Pos.Nom.Y	Dia.	Id	Name	Rect.	Contour
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-86	517	637	0.318091780531698	0.317997222963797	0.31810482948043	0.31792172121767	0.00490044927716319	0.00434613835491907	30080987	12024650	1443	577	0	False	517	637	26			{X=0,Y=0,Width=0,Height=0}
-87	570	637	0.317670904349778	0.318182526198511	0.317586022735943	0.318135347524224	0.00472147885846912	0.00438107646690839	30041186	12031657	1443	577	0	False	570	637	26			{X=0,Y=0,Width=0,Height=0}
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-89	676	638	0.317733790977096	0.317543101778337	0.317814908064393	0.317616540779736	0.00403084897028966	0.00373318432580729	30047133	12007478	1443	577	0	False	676	638	26			{X=0,Y=0,Width=0,Height=0}
-90	729	638	0.317400672676479	0.316614020396579	0.317219806210422	0.316609445334554	0.00495485378530497	0.00477942373628537	30015631	11972346	1443	577	0	False	729	638	26			{X=0,Y=0,Width=0,Height=0}
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-92	305	689	0.316898838024954	0.317709470074268	0.316823071641108	0.317860685130083	0.00521006079104634	0.00519028525032037	29968174	12013769	1443	577	0	False	305	689	26			{X=0,Y=0,Width=0,Height=0}
-93	358	689	0.317092626545591	0.31623072011344	0.317128252079042	0.316090638590066	0.00553611098139138	0.00558722411049374	29986500	11957852	1443	577	0	False	358	689	26			{X=0,Y=0,Width=0,Height=0}
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-95	464	689	0.320165632822991	0.318206247762881	0.318760967421988	0.318303196765087	0.00947564709652464	0.00525469737191075	30277105	12032554	1443	577	0	False	464	689	26			{X=0,Y=0,Width=0,Height=0}
-96	517	690	0.317879222250932	0.319134006872378	0.317677576867323	0.318226901655604	0.00495245799839377	0.0070451702870915	30060886	12067636	1443	577	0	False	517	690	26			{X=0,Y=0,Width=0,Height=0}
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-98	623	690	0.317417613045903	0.317298825200764	0.317387655451286	0.317387655451286	0.00420513918824277	0.00401023663423507	30017233	11998241	1443	577	0	False	623	690	26			{X=0,Y=0,Width=0,Height=0}
-99	676	690	0.317521401888534	0.317383397734604	0.317677576867323	0.317402914473182	0.00431576543414673	0.00391559404664825	30027048	12001439	1443	577	0	False	676	690	26			{X=0,Y=0,Width=0,Height=0}
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diff --git a/example_data/record_time/220307_SN0801_CHECK-01_SL1,11,9,14_MS_1_1_B02_4.csv b/example_data/record_time/220307_SN0801_CHECK-01_SL1,11,9,14_MS_1_1_B02_4.csv
deleted file mode 100644
index b374237..0000000
--- a/example_data/record_time/220307_SN0801_CHECK-01_SL1,11,9,14_MS_1_1_B02_4.csv
+++ /dev/null
@@ -1,101 +0,0 @@
- ID 	Pos.X	Pos.Y	Bkg.Mean	Spot.Mean	Bkg.Median	Spot.Median	Bkg.StdDev	Spot.StdDev	Bkg.Sum	Spot.Sum	Bkg.Area	Spot.Area	Spot.Sat. (%)	Found	Pos.Nom.X	Pos.Nom.Y	Dia.	Id	Name	Rect.	Contour
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diff --git a/example_data/record_time/220307_SN0801_CHECK-01_SL1,11,9,14_MS_1_1_B03_1.csv b/example_data/record_time/220307_SN0801_CHECK-01_SL1,11,9,14_MS_1_1_B03_1.csv
deleted file mode 100644
index a0cf875..0000000
--- a/example_data/record_time/220307_SN0801_CHECK-01_SL1,11,9,14_MS_1_1_B03_1.csv
+++ /dev/null
@@ -1,101 +0,0 @@
- ID 	Pos.X	Pos.Y	Bkg.Mean	Spot.Mean	Bkg.Median	Spot.Median	Bkg.StdDev	Spot.StdDev	Bkg.Sum	Spot.Sum	Bkg.Area	Spot.Area	Spot.Sat. (%)	Found	Pos.Nom.X	Pos.Nom.Y	Dia.	Id	Name	Rect.	Contour
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-91	99	709	0.237940553469103	0.939792560597679	0.23759822995346	1	0.00769752411018085	0.157059061171633	21082323	53028392	1352	861	79	True	97	706	32			{X=0,Y=0,Width=0,Height=0}
-92	150	706	0.23476131594166	0.233045963902761	0.234287022201877	0.232898451209277	0.007365299425192	0.00441026676108066	20800632	8812329	1352	577	0	False	150	706	27			{X=0,Y=0,Width=0,Height=0}
-93	204	706	0.233417145091177	0.232562858509331	0.233401998931868	0.23237964446479	0.00542585178310966	0.00545640438471024	20681534	8794061	1352	577	0	False	204	706	27			{X=0,Y=0,Width=0,Height=0}
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diff --git a/example_data/record_time/220307_SN0801_CHECK-01_SL1,11,9,14_MS_1_1_B03_2.csv b/example_data/record_time/220307_SN0801_CHECK-01_SL1,11,9,14_MS_1_1_B03_2.csv
deleted file mode 100644
index 6946c4b..0000000
--- a/example_data/record_time/220307_SN0801_CHECK-01_SL1,11,9,14_MS_1_1_B03_2.csv
+++ /dev/null
@@ -1,101 +0,0 @@
- ID 	Pos.X	Pos.Y	Bkg.Mean	Spot.Mean	Bkg.Median	Spot.Median	Bkg.StdDev	Spot.StdDev	Bkg.Sum	Spot.Sum	Bkg.Area	Spot.Area	Spot.Sat. (%)	Found	Pos.Nom.X	Pos.Nom.Y	Dia.	Id	Name	Rect.	Contour
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diff --git a/example_data/record_time/220307_SN0801_CHECK-01_SL1,11,9,14_MS_1_1_B03_3.csv b/example_data/record_time/220307_SN0801_CHECK-01_SL1,11,9,14_MS_1_1_B03_3.csv
deleted file mode 100644
index 3f4f27a..0000000
--- a/example_data/record_time/220307_SN0801_CHECK-01_SL1,11,9,14_MS_1_1_B03_3.csv
+++ /dev/null
@@ -1,101 +0,0 @@
- ID 	Pos.X	Pos.Y	Bkg.Mean	Spot.Mean	Bkg.Median	Spot.Median	Bkg.StdDev	Spot.StdDev	Bkg.Sum	Spot.Sum	Bkg.Area	Spot.Area	Spot.Sat. (%)	Found	Pos.Nom.X	Pos.Nom.Y	Dia.	Id	Name	Rect.	Contour
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diff --git a/example_data/record_time/220307_SN0801_CHECK-01_SL1,11,9,14_MS_1_1_B03_4.csv b/example_data/record_time/220307_SN0801_CHECK-01_SL1,11,9,14_MS_1_1_B03_4.csv
deleted file mode 100644
index a87ccc7..0000000
--- a/example_data/record_time/220307_SN0801_CHECK-01_SL1,11,9,14_MS_1_1_B03_4.csv
+++ /dev/null
@@ -1,101 +0,0 @@
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diff --git a/example_data/record_time/220307_SN0801_CHECK-01_SL1,11,9,14_MS_1_1_B04_1.csv b/example_data/record_time/220307_SN0801_CHECK-01_SL1,11,9,14_MS_1_1_B04_1.csv
deleted file mode 100644
index dda9bf1..0000000
--- a/example_data/record_time/220307_SN0801_CHECK-01_SL1,11,9,14_MS_1_1_B04_1.csv
+++ /dev/null
@@ -1,101 +0,0 @@
- ID 	Pos.X	Pos.Y	Bkg.Mean	Spot.Mean	Bkg.Median	Spot.Median	Bkg.StdDev	Spot.StdDev	Bkg.Sum	Spot.Sum	Bkg.Area	Spot.Area	Spot.Sat. (%)	Found	Pos.Nom.X	Pos.Nom.Y	Dia.	Id	Name	Rect.	Contour
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diff --git a/example_data/record_time/220307_SN0801_CHECK-01_SL1,11,9,14_MS_1_1_B04_2.csv b/example_data/record_time/220307_SN0801_CHECK-01_SL1,11,9,14_MS_1_1_B04_2.csv
deleted file mode 100644
index ddf4378..0000000
--- a/example_data/record_time/220307_SN0801_CHECK-01_SL1,11,9,14_MS_1_1_B04_2.csv
+++ /dev/null
@@ -1,101 +0,0 @@
- ID 	Pos.X	Pos.Y	Bkg.Mean	Spot.Mean	Bkg.Median	Spot.Median	Bkg.StdDev	Spot.StdDev	Bkg.Sum	Spot.Sum	Bkg.Area	Spot.Area	Spot.Sat. (%)	Found	Pos.Nom.X	Pos.Nom.Y	Dia.	Id	Name	Rect.	Contour
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diff --git a/example_data/record_time/220307_SN0801_CHECK-01_SL1,11,9,14_MS_1_1_B04_3.csv b/example_data/record_time/220307_SN0801_CHECK-01_SL1,11,9,14_MS_1_1_B04_3.csv
deleted file mode 100644
index ca30782..0000000
--- a/example_data/record_time/220307_SN0801_CHECK-01_SL1,11,9,14_MS_1_1_B04_3.csv
+++ /dev/null
@@ -1,101 +0,0 @@
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diff --git a/example_data/record_time/220307_SN0801_CHECK-01_SL1,11,9,14_MS_1_1_B04_4.csv b/example_data/record_time/220307_SN0801_CHECK-01_SL1,11,9,14_MS_1_1_B04_4.csv
deleted file mode 100644
index 0b1220d..0000000
--- a/example_data/record_time/220307_SN0801_CHECK-01_SL1,11,9,14_MS_1_1_B04_4.csv
+++ /dev/null
@@ -1,101 +0,0 @@
- ID 	Pos.X	Pos.Y	Bkg.Mean	Spot.Mean	Bkg.Median	Spot.Median	Bkg.StdDev	Spot.StdDev	Bkg.Sum	Spot.Sum	Bkg.Area	Spot.Area	Spot.Sat. (%)	Found	Pos.Nom.X	Pos.Nom.Y	Dia.	Id	Name	Rect.	Contour
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diff --git a/example_data/record_time/220307_SN0801_CHECK-01_SL1,11,9,14_MS_1_1.xml b/example_data/xml_with_parameters/220307_SN0801_CHECK-01_SL1,11,9,14_MS_1_1.xml
similarity index 100%
rename from example_data/record_time/220307_SN0801_CHECK-01_SL1,11,9,14_MS_1_1.xml
rename to example_data/xml_with_parameters/220307_SN0801_CHECK-01_SL1,11,9,14_MS_1_1.xml
diff --git a/example_data/record_time/220307_SN0801_CHECK-01_SL1,11,9,14_MS_1_1.xsl b/example_data/xml_with_parameters/220307_SN0801_CHECK-01_SL1,11,9,14_MS_1_1.xsl
similarity index 100%
rename from example_data/record_time/220307_SN0801_CHECK-01_SL1,11,9,14_MS_1_1.xsl
rename to example_data/xml_with_parameters/220307_SN0801_CHECK-01_SL1,11,9,14_MS_1_1.xsl
diff --git a/example_data/record_time/220307_SN0801_CHECK-01_SL1,11,9,14_MS_1_1_A01.xml b/example_data/xml_with_parameters/220307_SN0801_CHECK-01_SL1,11,9,14_MS_1_1_A01.xml
similarity index 100%
rename from example_data/record_time/220307_SN0801_CHECK-01_SL1,11,9,14_MS_1_1_A01.xml
rename to example_data/xml_with_parameters/220307_SN0801_CHECK-01_SL1,11,9,14_MS_1_1_A01.xml
diff --git a/example_data/xml_with_parameters/Parameters/Assay/S QC 10x10 Cy3 100ms Cy5 150-15ms/S QC 10x10 Cy3 100ms Cy5 150-15ms.svalg b/example_data/xml_with_parameters/Parameters/Assay/S QC 10x10 Cy3 100ms Cy5 150-15ms/S QC 10x10 Cy3 100ms Cy5 150-15ms.svalg
new file mode 100644
index 0000000..ffa263a
--- /dev/null
+++ b/example_data/xml_with_parameters/Parameters/Assay/S QC 10x10 Cy3 100ms Cy5 150-15ms/S QC 10x10 Cy3 100ms Cy5 150-15ms.svalg	
@@ -0,0 +1,25 @@
+<?xml version="1.0" encoding="utf-8"?>
+<!--Algorithm configuration-->
+<Algorithm>
+  <BrightnessCheck>
+    <Settings Active="False" MinimumBrightnessPercent="70" MaximumBrightnessPercent="100" HistogrammPercent="95" OverrideMaximumPixelValue="0" SubSampleX="2" SubSampleY="2" />
+  </BrightnessCheck>
+  <Shading>
+    <Settings Active="true" />
+  </Shading>
+  <OrientationDetection>
+    <Settings Active="True" HoughCircleSensitivitySliderUsed="True" BlobMethod="Classic,HoughCircle" HoughCircleGamma="1.1" HoughCircleScale="1" HoughCircleMinDist="5" HoughCircleCannyThresh="100" HoughCircleAccumThresh="15" HoughCircleMinRadius="5" HoughCircleMaxRadius="30" HoughCircleSmoothRadius="0" HoughCircleDilationRadius="3" HoughCircleSensitivitySlider="2" RefPatternFittingMethod="ICP" BinThresholdPercent="2" JoinRadius="2" OpeningNeighborhoodSizeXY="7" BlobAreaMin="50">
+    </Settings>
+    <DebugSettings ImageDebugAODResult="0" ImageDebugAODBinary="0" ImageDebugAODMorphed="1" ShowResults="1" ShowSearchOrder="1" ShowDistances="1" />
+  </OrientationDetection>
+  <Flip>
+    <Settings Direction="FLIP_NONE" />
+  </Flip>
+  <MicroArraySpotFinding>
+    <Settings Active="True" BkgAvgAreaPix="10" HistogramPerCent="10" BinarizationThresholdOffsetPerc="7" SpotImageSubSampling="1" ApertureWidth="3" MinArea="50" MinSpotDiameterMm="0.2" SpotFindingSensitivity="10" SpotShape="CIRCLE" SelectionPreference="COMPACTEST" InsideGridRectCriteria="RECTANGLE" BlobbingActive="True" CircleDetectionActive="True" MeanBeforeEdgeDetectionActive="False" CannyThreshold="50" MinMatchQuality="0.4" CircleMatchExponent="1" />
+  </MicroArraySpotFinding>
+  <MicroArrayAnalysis>
+    <Settings Active="True" MinBkgThresholdPerc="1" MaxSpotThresholdPerc="100" AutoAdjustAnalysisDiameter="False" MinSpotSizeMm="0.2" MaxSpotSizeMm="0.28" AutoAdjustTolerancePercentage="10">
+    </Settings>
+  </MicroArrayAnalysis>
+</Algorithm>
\ No newline at end of file
diff --git a/example_data/xml_with_parameters/Parameters/Assay/S QC 10x10 Cy3 100ms Cy5 150-15ms/S QC 10x10 Cy3 100ms Cy5 150-15ms.svary b/example_data/xml_with_parameters/Parameters/Assay/S QC 10x10 Cy3 100ms Cy5 150-15ms/S QC 10x10 Cy3 100ms Cy5 150-15ms.svary
new file mode 100644
index 0000000..fc336c3
--- /dev/null
+++ b/example_data/xml_with_parameters/Parameters/Assay/S QC 10x10 Cy3 100ms Cy5 150-15ms/S QC 10x10 Cy3 100ms Cy5 150-15ms.svary	
@@ -0,0 +1,27 @@
+<?xml version="1.0" encoding="utf-8"?>
+<!--Definition of the microarray and the-->
+<!--embedded reference pattern-->
+<MicroArray>
+  <Layout NofSpotsX="10" NofSpotsY="10" SpotDistMmX="0.303" SpotDistMmY="0.297" />
+  <ReferencePattern ReferencePointOffsetMm.X="1.6392982179205673" ReferencePointOffsetMm.Y="2.0253288169139632">
+    <Features MarkerType="BRIGHT">
+    </Features>
+    <Tolerances ScalePercent="5" RotationPercent="5">
+      <CIRCLE PositionMm="0.06" SizePercent="50" SimpleCompactnessMax="17" EccentricityMax="0.2" />
+      <RECT PositionMm="0.1" SizePercent="30" SimpleCompactnessMin="13" SimpleCompactnessMax="22" EccentricityMin="0.25" EccentricityMax="0.4">
+      </RECT>
+    </Tolerances>
+    <Shapes>
+      <Shape0 ShapeType="CIRCLE" PosMm.X="0" PosMm.Y="0" DiameterMm="0.187">
+      </Shape0>
+      <Shape1 ShapeType="CIRCLE" PosMm.X="2.728" PosMm.Y="2.682" DiameterMm="0.184">
+      </Shape1>
+      <Shape2 ShapeType="CIRCLE" PosMm.X="2.701" PosMm.Y="-0.021" DiameterMm="0.187">
+      </Shape2>
+      <Shape3 ShapeType="CIRCLE" PosMm.X="0.024" PosMm.Y="2.7" DiameterMm="0.191">
+      </Shape3>
+    </Shapes>
+  </ReferencePattern>
+  <RelationArrayToRefPattern OffsetMm.X="0" OffsetMm.Y="0" ScalingFactor="0.99430589150056758" RotationAngleDeg="-0.13126175132547502">
+  </RelationArrayToRefPattern>
+</MicroArray>
\ No newline at end of file
diff --git a/example_data/xml_with_parameters/Parameters/Assay/S QC 10x10 Cy3 100ms Cy5 150-15ms/S QC 10x10 Cy3 100ms Cy5 150-15ms.svexp b/example_data/xml_with_parameters/Parameters/Assay/S QC 10x10 Cy3 100ms Cy5 150-15ms/S QC 10x10 Cy3 100ms Cy5 150-15ms.svexp
new file mode 100644
index 0000000..33be21d
--- /dev/null
+++ b/example_data/xml_with_parameters/Parameters/Assay/S QC 10x10 Cy3 100ms Cy5 150-15ms/S QC 10x10 Cy3 100ms Cy5 150-15ms.svexp	
@@ -0,0 +1,19 @@
+<?xml version="1.0"?>
+<Assay>
+  <Channels>
+    <ChannelConfig1 IlluminationID="4" Description="Cy3/Cy5 Green" ExposureTimeMs="100" Intensity="100">
+    </ChannelConfig1>
+    <ChannelConfig2 IlluminationID="3" Description="Cy3/Cy5 Red" ExposureTimeMs="150" Intensity="100">
+    </ChannelConfig2>
+    <ChannelConfig3 IlluminationID="3" Description="Cy3/Cy5 Red" ExposureTimeMs="15" Intensity="100">
+    </ChannelConfig3>
+  </Channels>
+  <Components MicroArray="S QC 10x10 Cy3 100ms Cy5 150-15ms" AlgoConfig="S QC 10x10 Cy3 100ms Cy5 150-15ms">
+  </Components>
+  <DebugSwitches DoImageProcessing="True" DoDarkImageCorrection="True" SaveResultAsCSVFile="True" SaveResultAsXmlFile="True">
+  </DebugSwitches>
+  <RefPattern ChannelConfig="Channel1">
+  </RefPattern>
+  <WorkbookAnalysis Active="True" UseSingleWorkbook="YES" TemplateWorkbookName="160212_wb10x10_Spectra_V3_Ver03.2.3.xlsx" PasteWorksheetName="Input_Data" PasteStartingCell="W300" ParameterWorksheetName="parameter" ResultWorksheetName="Net Intensity" KeepDataWorkbookOpen="NO">
+  </WorkbookAnalysis>
+</Assay>
\ No newline at end of file
diff --git a/example_data/xml_with_parameters/Parameters/PlateHolder/SinglePlateHolder.svph b/example_data/xml_with_parameters/Parameters/PlateHolder/SinglePlateHolder.svph
new file mode 100644
index 0000000..9e1b963
--- /dev/null
+++ b/example_data/xml_with_parameters/Parameters/PlateHolder/SinglePlateHolder.svph
@@ -0,0 +1,8 @@
+<?xml version="1.0" encoding="utf-8"?>
+<!--Single plate holder configuration-->
+<PlateHolder>
+  <Layout OffsetXMm="-12.5" OffsetYMm="-10.0" NofMountsX="1" NofMountsY="1" MountDistXMm="0" MountDistYMm="0.00" MountSizeXMm="129.0" MountSizeYMm="85.0"></Layout>
+  <Rotate>
+    <Settings Direction="ROTATE_NONE"></Settings>
+  </Rotate>
+</PlateHolder>
\ No newline at end of file
diff --git a/example_data/xml_with_parameters/Parameters/Rack/Microplate (96 wells).svmpd b/example_data/xml_with_parameters/Parameters/Rack/Microplate (96 wells).svmpd
new file mode 100644
index 0000000..5695a27
--- /dev/null
+++ b/example_data/xml_with_parameters/Parameters/Rack/Microplate (96 wells).svmpd	
@@ -0,0 +1,21 @@
+<?xml version="1.0"?>
+<Rack Version="2">
+  <Reference RefPosXMm="103.5" RefPosYMm="67.5" RefPosZMm="3.8" XAxisInverted="True" YAxisInverted="True">
+  </Reference>
+  <ChannelSettings>
+    <ChannelSetting1 ExposureTimeMs="100" IlluminationId="3" Intensity="100">
+    </ChannelSetting1>
+    <ChannelSetting2 ExposureTimeMs="50" IlluminationId="4" Intensity="100">
+    </ChannelSetting2>
+  </ChannelSettings>
+  <PlateHolder HolderType="SinglePlateHolder">
+  </PlateHolder>
+  <Layout OffsetXMm="12.5" OffsetYMm="10" OffsetZMm="3.42" NofWellsX="12" NofWellsY="8" WellDistXMm="9" WellDistYMm="9" WellDiameterMm="5" WellSizeXMm="1" WellSizeYMm="1" WellType="Circle">
+  </Layout>
+  <DigitalPlate Create="False" BkgndColor="Black">
+  </DigitalPlate>
+  <Flip>
+    <Settings Direction="FLIP_NONE">
+    </Settings>
+  </Flip>
+</Rack>
\ No newline at end of file
diff --git a/example_data/xml_wo_parameters/220307_SN0801_CHECK-01_SL1,11,9,14_MS_1_1.xml b/example_data/xml_wo_parameters/220307_SN0801_CHECK-01_SL1,11,9,14_MS_1_1.xml
new file mode 100644
index 0000000..fe37c69
--- /dev/null
+++ b/example_data/xml_wo_parameters/220307_SN0801_CHECK-01_SL1,11,9,14_MS_1_1.xml
@@ -0,0 +1,148744 @@
+<?xml version="1.0" encoding="utf-8"?>
+<?xml-stylesheet type='text/xsl' href='220307_SN0801_CHECK-01_SL1,11,9,14_MS_1_1.xsl'?>
+<ScanJobResult ID="220307_SN0801_CHECK-01_SL1,11,9,14_MS_1_1" Rack="Calibration Slide - 4 Slides">
+  <StartTime>3/7/2022 5:31:40 PM</StartTime>
+  <FinishTime>3/7/2022 5:33:45 PM</FinishTime>
+  <ExperimentResults>
+    <AssayResult ID="A01" Type="Calibration Check_v1.2.4.3c">
+      <ReferencePatternResult Status="Valid" Rotation="0.23807670284076057" Scaling="0.998411582643245" PositionTopLeft.X="230.07833862304688" PositionTopLeft.Y="232.07130432128906" />
+      <RelationArrayToRefPattern OffsetMm.X="0.018938772094637457" OffsetMm.Y="-0.0071761016171074665" ScalingFactor="1.001991960802898" RotationAngleDeg="0" />
+      <ChannelConfig1>
+        <Status ErrorID="0" Message="no error" />
+        <ChannelDescription>Cy3/Cy5 Green</ChannelDescription>
+        <Timestamp>3/7/2022 5:31:47 PM</Timestamp>
+        <ImageFileName>220307_SN0801_CHECK-01_SL1,11,9,14_MS_1_1_A01_1.tif</ImageFileName>
+        <ImageResolutionPixPerMm>150.3716670323235</ImageResolutionPixPerMm>
+        <SystemImageResolutionPixPerMm>150.6109</SystemImageResolutionPixPerMm>
+        <Transform>
+          <M11>150.66990076589988</M11>
+          <M12>-0.62607054037768517</M12>
+          <M21>0.62607054037768517</M21>
+          <M22>150.66990076589988</M22>
+          <Dx>227.22602466270919</Dx>
+          <Dy>233.1385439330713</Dy>
+        </Transform>
+        <SpotResults>
+          <Spot ID="1">
+            <Result Label="Pos.X" Type="System.Int32" Value="228" />
+            <Result Label="Pos.Y" Type="System.Int32" Value="232" />
+            <Result Label="Bkg.Mean" Type="System.Double" Value="0.23538493173349712" />
+            <Result Label="Spot.Mean" Type="System.Double" Value="0.950414913363403" />
+            <Result Label="Bkg.Median" Type="System.Double" Value="0.23471427481498436" />
+            <Result Label="Spot.Median" Type="System.Double" Value="1" />
+            <Result Label="Bkg.StdDev" Type="System.Double" Value="0.00700611064105654" />
+            <Result Label="Spot.StdDev" Type="System.Double" Value="0.14573685500228903" />
+            <Result Label="Bkg.Sum" Type="System.UInt32" Value="20038311" />
+            <Result Label="Spot.Sum" Type="System.UInt32" Value="53627765" />
+            <Result Label="Bkg.Area" Type="System.UInt32" Value="1299" />
+            <Result Label="Spot.Area" Type="System.UInt32" Value="861" />
+            <Result Label="Spot.Sat. (%)" Type="System.UInt32" Value="81" />
+            <Result Label="Found" Type="System.Boolean" Value="True" />
+            <Result Label="Pos.Nom.X" Type="System.Int32" Value="227" />
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+          <Spot ID="2">
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+            <Result Label="Found" Type="System.Boolean" Value="False" />
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+          </Spot>
+          <Spot ID="89">
+            <Result Label="Pos.X" Type="System.Int32" Value="658" />
+            <Result Label="Pos.Y" Type="System.Int32" Value="621" />
+            <Result Label="Bkg.Mean" Type="System.Double" Value="0.033395726169980218" />
+            <Result Label="Spot.Mean" Type="System.Double" Value="0.033477183332652365" />
+            <Result Label="Bkg.Median" Type="System.Double" Value="0.033325703822384985" />
+            <Result Label="Spot.Median" Type="System.Double" Value="0.033447775997558556" />
+            <Result Label="Bkg.StdDev" Type="System.Double" Value="0.0015290505042520268" />
+            <Result Label="Spot.StdDev" Type="System.Double" Value="0.0015591379747156575" />
+            <Result Label="Bkg.Sum" Type="System.UInt32" Value="2842977" />
+            <Result Label="Spot.Sum" Type="System.UInt32" Value="1265896" />
+            <Result Label="Bkg.Area" Type="System.UInt32" Value="1299" />
+            <Result Label="Spot.Area" Type="System.UInt32" Value="577" />
+            <Result Label="Spot.Sat. (%)" Type="System.UInt32" Value="0" />
+            <Result Label="Found" Type="System.Boolean" Value="False" />
+            <Result Label="Pos.Nom.X" Type="System.Int32" Value="658" />
+            <Result Label="Pos.Nom.Y" Type="System.Int32" Value="621" />
+            <Result Label="Dia." Type="System.Int32" Value="27" />
+            <Result Label="Id" Type="System.String" Value="" />
+            <Result Label="Name" Type="System.String" Value="" />
+            <Result Label="Rect." Type="System.Drawing.Rectangle" Value="0, 0, 0, 0" />
+            <Result Label="Contour" Type="System.Collections.ArrayList" ContentType="" Value="" />
+          </Spot>
+          <Spot ID="90">
+            <Result Label="Pos.X" Type="System.Int32" Value="712" />
+            <Result Label="Pos.Y" Type="System.Int32" Value="621" />
+            <Result Label="Bkg.Mean" Type="System.Double" Value="0.033546554377180821" />
+            <Result Label="Spot.Mean" Type="System.Double" Value="0.033365927344577148" />
+            <Result Label="Bkg.Median" Type="System.Double" Value="0.033524071107042037" />
+            <Result Label="Spot.Median" Type="System.Double" Value="0.033417257953765163" />
+            <Result Label="Bkg.StdDev" Type="System.Double" Value="0.0017936396933096565" />
+            <Result Label="Spot.StdDev" Type="System.Double" Value="0.0018815504319990742" />
+            <Result Label="Bkg.Sum" Type="System.UInt32" Value="2855817" />
+            <Result Label="Spot.Sum" Type="System.UInt32" Value="1261689" />
+            <Result Label="Bkg.Area" Type="System.UInt32" Value="1299" />
+            <Result Label="Spot.Area" Type="System.UInt32" Value="577" />
+            <Result Label="Spot.Sat. (%)" Type="System.UInt32" Value="0" />
+            <Result Label="Found" Type="System.Boolean" Value="False" />
+            <Result Label="Pos.Nom.X" Type="System.Int32" Value="712" />
+            <Result Label="Pos.Nom.Y" Type="System.Int32" Value="621" />
+            <Result Label="Dia." Type="System.Int32" Value="27" />
+            <Result Label="Id" Type="System.String" Value="" />
+            <Result Label="Name" Type="System.String" Value="" />
+            <Result Label="Rect." Type="System.Drawing.Rectangle" Value="0, 0, 0, 0" />
+            <Result Label="Contour" Type="System.Collections.ArrayList" ContentType="" Value="" />
+          </Spot>
+          <Spot ID="91">
+            <Result Label="Pos.X" Type="System.Int32" Value="235" />
+            <Result Label="Pos.Y" Type="System.Int32" Value="673" />
+            <Result Label="Bkg.Mean" Type="System.Double" Value="0.03284635439471871" />
+            <Result Label="Spot.Mean" Type="System.Double" Value="0.03522574745014919" />
+            <Result Label="Bkg.Median" Type="System.Double" Value="0.032806897077897308" />
+            <Result Label="Spot.Median" Type="System.Double" Value="0.0349584191653315" />
+            <Result Label="Bkg.StdDev" Type="System.Double" Value="0.002462431182791" />
+            <Result Label="Spot.StdDev" Type="System.Double" Value="0.0034160811887377729" />
+            <Result Label="Bkg.Sum" Type="System.UInt32" Value="2796209" />
+            <Result Label="Spot.Sum" Type="System.UInt32" Value="1729081" />
+            <Result Label="Bkg.Area" Type="System.UInt32" Value="1299" />
+            <Result Label="Spot.Area" Type="System.UInt32" Value="749" />
+            <Result Label="Spot.Sat. (%)" Type="System.UInt32" Value="0" />
+            <Result Label="Found" Type="System.Boolean" Value="True" />
+            <Result Label="Pos.Nom.X" Type="System.Int32" Value="233" />
+            <Result Label="Pos.Nom.Y" Type="System.Int32" Value="673" />
+            <Result Label="Dia." Type="System.Int32" Value="31" />
+            <Result Label="Id" Type="System.String" Value="" />
+            <Result Label="Name" Type="System.String" Value="" />
+            <Result Label="Rect." Type="System.Drawing.Rectangle" Value="0, 0, 0, 0" />
+            <Result Label="Contour" Type="System.Collections.ArrayList" ContentType="" Value="" />
+          </Spot>
+          <Spot ID="92">
+            <Result Label="Pos.X" Type="System.Int32" Value="286" />
+            <Result Label="Pos.Y" Type="System.Int32" Value="673" />
+            <Result Label="Bkg.Mean" Type="System.Double" Value="0.033294304772708415" />
+            <Result Label="Spot.Mean" Type="System.Double" Value="0.033167295605467807" />
+            <Result Label="Bkg.Median" Type="System.Double" Value="0.033340962844281681" />
+            <Result Label="Spot.Median" Type="System.Double" Value="0.033188372625314717" />
+            <Result Label="Bkg.StdDev" Type="System.Double" Value="0.00191553909673961" />
+            <Result Label="Spot.StdDev" Type="System.Double" Value="0.0016718605070151845" />
+            <Result Label="Bkg.Sum" Type="System.UInt32" Value="2834343" />
+            <Result Label="Spot.Sum" Type="System.UInt32" Value="1254178" />
+            <Result Label="Bkg.Area" Type="System.UInt32" Value="1299" />
+            <Result Label="Spot.Area" Type="System.UInt32" Value="577" />
+            <Result Label="Spot.Sat. (%)" Type="System.UInt32" Value="0" />
+            <Result Label="Found" Type="System.Boolean" Value="False" />
+            <Result Label="Pos.Nom.X" Type="System.Int32" Value="286" />
+            <Result Label="Pos.Nom.Y" Type="System.Int32" Value="673" />
+            <Result Label="Dia." Type="System.Int32" Value="27" />
+            <Result Label="Id" Type="System.String" Value="" />
+            <Result Label="Name" Type="System.String" Value="" />
+            <Result Label="Rect." Type="System.Drawing.Rectangle" Value="0, 0, 0, 0" />
+            <Result Label="Contour" Type="System.Collections.ArrayList" ContentType="" Value="" />
+          </Spot>
+          <Spot ID="93">
+            <Result Label="Pos.X" Type="System.Int32" Value="339" />
+            <Result Label="Pos.Y" Type="System.Int32" Value="673" />
+            <Result Label="Bkg.Mean" Type="System.Double" Value="0.033076085488817013" />
+            <Result Label="Spot.Mean" Type="System.Double" Value="0.033055034690473911" />
+            <Result Label="Bkg.Median" Type="System.Double" Value="0.033020523384451057" />
+            <Result Label="Spot.Median" Type="System.Double" Value="0.033112077515831236" />
+            <Result Label="Bkg.StdDev" Type="System.Double" Value="0.0020482933197616825" />
+            <Result Label="Spot.StdDev" Type="System.Double" Value="0.0020877613552310647" />
+            <Result Label="Bkg.Sum" Type="System.UInt32" Value="2815766" />
+            <Result Label="Spot.Sum" Type="System.UInt32" Value="1249933" />
+            <Result Label="Bkg.Area" Type="System.UInt32" Value="1299" />
+            <Result Label="Spot.Area" Type="System.UInt32" Value="577" />
+            <Result Label="Spot.Sat. (%)" Type="System.UInt32" Value="0" />
+            <Result Label="Found" Type="System.Boolean" Value="False" />
+            <Result Label="Pos.Nom.X" Type="System.Int32" Value="339" />
+            <Result Label="Pos.Nom.Y" Type="System.Int32" Value="673" />
+            <Result Label="Dia." Type="System.Int32" Value="27" />
+            <Result Label="Id" Type="System.String" Value="" />
+            <Result Label="Name" Type="System.String" Value="" />
+            <Result Label="Rect." Type="System.Drawing.Rectangle" Value="0, 0, 0, 0" />
+            <Result Label="Contour" Type="System.Collections.ArrayList" ContentType="" Value="" />
+          </Spot>
+          <Spot ID="94">
+            <Result Label="Pos.X" Type="System.Int32" Value="392" />
+            <Result Label="Pos.Y" Type="System.Int32" Value="673" />
+            <Result Label="Bkg.Mean" Type="System.Double" Value="0.033279409899910094" />
+            <Result Label="Spot.Mean" Type="System.Double" Value="0.033391341417441482" />
+            <Result Label="Bkg.Median" Type="System.Double" Value="0.033279926756694896" />
+            <Result Label="Spot.Median" Type="System.Double" Value="0.03338673990997177" />
+            <Result Label="Bkg.StdDev" Type="System.Double" Value="0.0019536886794702243" />
+            <Result Label="Spot.StdDev" Type="System.Double" Value="0.0018695851953138996" />
+            <Result Label="Bkg.Sum" Type="System.UInt32" Value="2833075" />
+            <Result Label="Spot.Sum" Type="System.UInt32" Value="1262650" />
+            <Result Label="Bkg.Area" Type="System.UInt32" Value="1299" />
+            <Result Label="Spot.Area" Type="System.UInt32" Value="577" />
+            <Result Label="Spot.Sat. (%)" Type="System.UInt32" Value="0" />
+            <Result Label="Found" Type="System.Boolean" Value="False" />
+            <Result Label="Pos.Nom.X" Type="System.Int32" Value="392" />
+            <Result Label="Pos.Nom.Y" Type="System.Int32" Value="673" />
+            <Result Label="Dia." Type="System.Int32" Value="27" />
+            <Result Label="Id" Type="System.String" Value="" />
+            <Result Label="Name" Type="System.String" Value="" />
+            <Result Label="Rect." Type="System.Drawing.Rectangle" Value="0, 0, 0, 0" />
+            <Result Label="Contour" Type="System.Collections.ArrayList" ContentType="" Value="" />
+          </Spot>
+          <Spot ID="95">
+            <Result Label="Pos.X" Type="System.Int32" Value="446" />
+            <Result Label="Pos.Y" Type="System.Int32" Value="673" />
+            <Result Label="Bkg.Mean" Type="System.Double" Value="0.0336493618903755" />
+            <Result Label="Spot.Mean" Type="System.Double" Value="0.033580479241713881" />
+            <Result Label="Bkg.Median" Type="System.Double" Value="0.033615625238422216" />
+            <Result Label="Spot.Median" Type="System.Double" Value="0.033585107194628823" />
+            <Result Label="Bkg.StdDev" Type="System.Double" Value="0.0020880024976271455" />
+            <Result Label="Spot.StdDev" Type="System.Double" Value="0.0019927049589408105" />
+            <Result Label="Bkg.Sum" Type="System.UInt32" Value="2864569" />
+            <Result Label="Spot.Sum" Type="System.UInt32" Value="1269802" />
+            <Result Label="Bkg.Area" Type="System.UInt32" Value="1299" />
+            <Result Label="Spot.Area" Type="System.UInt32" Value="577" />
+            <Result Label="Spot.Sat. (%)" Type="System.UInt32" Value="0" />
+            <Result Label="Found" Type="System.Boolean" Value="False" />
+            <Result Label="Pos.Nom.X" Type="System.Int32" Value="446" />
+            <Result Label="Pos.Nom.Y" Type="System.Int32" Value="673" />
+            <Result Label="Dia." Type="System.Int32" Value="27" />
+            <Result Label="Id" Type="System.String" Value="" />
+            <Result Label="Name" Type="System.String" Value="" />
+            <Result Label="Rect." Type="System.Drawing.Rectangle" Value="0, 0, 0, 0" />
+            <Result Label="Contour" Type="System.Collections.ArrayList" ContentType="" Value="" />
+          </Spot>
+          <Spot ID="96">
+            <Result Label="Pos.X" Type="System.Int32" Value="499" />
+            <Result Label="Pos.Y" Type="System.Int32" Value="673" />
+            <Result Label="Bkg.Mean" Type="System.Double" Value="0.033352063518409768" />
+            <Result Label="Spot.Mean" Type="System.Double" Value="0.033400332868819091" />
+            <Result Label="Bkg.Median" Type="System.Double" Value="0.0332646677347982" />
+            <Result Label="Spot.Median" Type="System.Double" Value="0.033310444800488288" />
+            <Result Label="Bkg.StdDev" Type="System.Double" Value="0.0018855405432714942" />
+            <Result Label="Spot.StdDev" Type="System.Double" Value="0.001854302392308932" />
+            <Result Label="Bkg.Sum" Type="System.UInt32" Value="2839260" />
+            <Result Label="Spot.Sum" Type="System.UInt32" Value="1262990" />
+            <Result Label="Bkg.Area" Type="System.UInt32" Value="1299" />
+            <Result Label="Spot.Area" Type="System.UInt32" Value="577" />
+            <Result Label="Spot.Sat. (%)" Type="System.UInt32" Value="0" />
+            <Result Label="Found" Type="System.Boolean" Value="False" />
+            <Result Label="Pos.Nom.X" Type="System.Int32" Value="499" />
+            <Result Label="Pos.Nom.Y" Type="System.Int32" Value="673" />
+            <Result Label="Dia." Type="System.Int32" Value="27" />
+            <Result Label="Id" Type="System.String" Value="" />
+            <Result Label="Name" Type="System.String" Value="" />
+            <Result Label="Rect." Type="System.Drawing.Rectangle" Value="0, 0, 0, 0" />
+            <Result Label="Contour" Type="System.Collections.ArrayList" ContentType="" Value="" />
+          </Spot>
+          <Spot ID="97">
+            <Result Label="Pos.X" Type="System.Int32" Value="552" />
+            <Result Label="Pos.Y" Type="System.Int32" Value="673" />
+            <Result Label="Bkg.Mean" Type="System.Double" Value="0.03337287875074306" />
+            <Result Label="Spot.Mean" Type="System.Double" Value="0.033473216515868133" />
+            <Result Label="Bkg.Median" Type="System.Double" Value="0.033356221866178377" />
+            <Result Label="Spot.Median" Type="System.Double" Value="0.033432516975661859" />
+            <Result Label="Bkg.StdDev" Type="System.Double" Value="0.0015892013061601948" />
+            <Result Label="Spot.StdDev" Type="System.Double" Value="0.001421605536270829" />
+            <Result Label="Bkg.Sum" Type="System.UInt32" Value="2841032" />
+            <Result Label="Spot.Sum" Type="System.UInt32" Value="1265746" />
+            <Result Label="Bkg.Area" Type="System.UInt32" Value="1299" />
+            <Result Label="Spot.Area" Type="System.UInt32" Value="577" />
+            <Result Label="Spot.Sat. (%)" Type="System.UInt32" Value="0" />
+            <Result Label="Found" Type="System.Boolean" Value="False" />
+            <Result Label="Pos.Nom.X" Type="System.Int32" Value="552" />
+            <Result Label="Pos.Nom.Y" Type="System.Int32" Value="673" />
+            <Result Label="Dia." Type="System.Int32" Value="27" />
+            <Result Label="Id" Type="System.String" Value="" />
+            <Result Label="Name" Type="System.String" Value="" />
+            <Result Label="Rect." Type="System.Drawing.Rectangle" Value="0, 0, 0, 0" />
+            <Result Label="Contour" Type="System.Collections.ArrayList" ContentType="" Value="" />
+          </Spot>
+          <Spot ID="98">
+            <Result Label="Pos.X" Type="System.Int32" Value="605" />
+            <Result Label="Pos.Y" Type="System.Int32" Value="673" />
+            <Result Label="Bkg.Mean" Type="System.Double" Value="0.033370823070348971" />
+            <Result Label="Spot.Mean" Type="System.Double" Value="0.033205535719267848" />
+            <Result Label="Bkg.Median" Type="System.Double" Value="0.033340962844281681" />
+            <Result Label="Spot.Median" Type="System.Double" Value="0.033142595559624628" />
+            <Result Label="Bkg.StdDev" Type="System.Double" Value="0.0016237396840205463" />
+            <Result Label="Spot.StdDev" Type="System.Double" Value="0.0014824665586824282" />
+            <Result Label="Bkg.Sum" Type="System.UInt32" Value="2840857" />
+            <Result Label="Spot.Sum" Type="System.UInt32" Value="1255624" />
+            <Result Label="Bkg.Area" Type="System.UInt32" Value="1299" />
+            <Result Label="Spot.Area" Type="System.UInt32" Value="577" />
+            <Result Label="Spot.Sat. (%)" Type="System.UInt32" Value="0" />
+            <Result Label="Found" Type="System.Boolean" Value="False" />
+            <Result Label="Pos.Nom.X" Type="System.Int32" Value="605" />
+            <Result Label="Pos.Nom.Y" Type="System.Int32" Value="673" />
+            <Result Label="Dia." Type="System.Int32" Value="27" />
+            <Result Label="Id" Type="System.String" Value="" />
+            <Result Label="Name" Type="System.String" Value="" />
+            <Result Label="Rect." Type="System.Drawing.Rectangle" Value="0, 0, 0, 0" />
+            <Result Label="Contour" Type="System.Collections.ArrayList" ContentType="" Value="" />
+          </Spot>
+          <Spot ID="99">
+            <Result Label="Pos.X" Type="System.Int32" Value="658" />
+            <Result Label="Pos.Y" Type="System.Int32" Value="673" />
+            <Result Label="Bkg.Mean" Type="System.Double" Value="0.033463704583926474" />
+            <Result Label="Spot.Mean" Type="System.Double" Value="0.033316104125767132" />
+            <Result Label="Bkg.Median" Type="System.Double" Value="0.033493553063248645" />
+            <Result Label="Spot.Median" Type="System.Double" Value="0.033295185778591592" />
+            <Result Label="Bkg.StdDev" Type="System.Double" Value="0.0015385121663594314" />
+            <Result Label="Spot.StdDev" Type="System.Double" Value="0.0015023415480366509" />
+            <Result Label="Bkg.Sum" Type="System.UInt32" Value="2848764" />
+            <Result Label="Spot.Sum" Type="System.UInt32" Value="1259805" />
+            <Result Label="Bkg.Area" Type="System.UInt32" Value="1299" />
+            <Result Label="Spot.Area" Type="System.UInt32" Value="577" />
+            <Result Label="Spot.Sat. (%)" Type="System.UInt32" Value="0" />
+            <Result Label="Found" Type="System.Boolean" Value="False" />
+            <Result Label="Pos.Nom.X" Type="System.Int32" Value="658" />
+            <Result Label="Pos.Nom.Y" Type="System.Int32" Value="673" />
+            <Result Label="Dia." Type="System.Int32" Value="27" />
+            <Result Label="Id" Type="System.String" Value="" />
+            <Result Label="Name" Type="System.String" Value="" />
+            <Result Label="Rect." Type="System.Drawing.Rectangle" Value="0, 0, 0, 0" />
+            <Result Label="Contour" Type="System.Collections.ArrayList" ContentType="" Value="" />
+          </Spot>
+          <Spot ID="100">
+            <Result Label="Pos.X" Type="System.Int32" Value="710" />
+            <Result Label="Pos.Y" Type="System.Int32" Value="674" />
+            <Result Label="Bkg.Mean" Type="System.Double" Value="0.033279903263204673" />
+            <Result Label="Spot.Mean" Type="System.Double" Value="0.0349764074431772" />
+            <Result Label="Bkg.Median" Type="System.Double" Value="0.0332646677347982" />
+            <Result Label="Spot.Median" Type="System.Double" Value="0.034714274814984361" />
+            <Result Label="Bkg.StdDev" Type="System.Double" Value="0.0016914203196689262" />
+            <Result Label="Spot.StdDev" Type="System.Double" Value="0.0025162728870991532" />
+            <Result Label="Bkg.Sum" Type="System.UInt32" Value="2833117" />
+            <Result Label="Spot.Sum" Type="System.UInt32" Value="1973566" />
+            <Result Label="Bkg.Area" Type="System.UInt32" Value="1299" />
+            <Result Label="Spot.Area" Type="System.UInt32" Value="861" />
+            <Result Label="Spot.Sat. (%)" Type="System.UInt32" Value="0" />
+            <Result Label="Found" Type="System.Boolean" Value="True" />
+            <Result Label="Pos.Nom.X" Type="System.Int32" Value="711" />
+            <Result Label="Pos.Nom.Y" Type="System.Int32" Value="674" />
+            <Result Label="Dia." Type="System.Int32" Value="32" />
+            <Result Label="Id" Type="System.String" Value="" />
+            <Result Label="Name" Type="System.String" Value="" />
+            <Result Label="Rect." Type="System.Drawing.Rectangle" Value="0, 0, 0, 0" />
+            <Result Label="Contour" Type="System.Collections.ArrayList" ContentType="" Value="" />
+          </Spot>
+        </SpotResults>
+        <Images>
+          <Microarray>
+            <Image_1>220307_SN0801_CHECK-01_SL1,11,9,14_MS_1_1_D04_4.tif</Image_1>
+          </Microarray>
+        </Images>
+      </ChannelConfig4>
+    </AssayResult>
+  </ExperimentResults>
+</ScanJobResult>
\ No newline at end of file
diff --git a/example_data/xml_wo_parameters/220307_SN0801_CHECK-01_SL1,11,9,14_MS_1_1.xsl b/example_data/xml_wo_parameters/220307_SN0801_CHECK-01_SL1,11,9,14_MS_1_1.xsl
new file mode 100644
index 0000000..4b467ce
--- /dev/null
+++ b/example_data/xml_wo_parameters/220307_SN0801_CHECK-01_SL1,11,9,14_MS_1_1.xsl
@@ -0,0 +1,118 @@
+<xsl:stylesheet version="1.0"
+ xmlns="urn:schemas-microsoft-com:office:spreadsheet"
+ xmlns:xsl="http://www.w3.org/1999/XSL/Transform"
+ xmlns:exsl="http://exslt.org/common"
+ xmlns:msxsl="urn:schemas-microsoft-com:xslt"
+ xmlns:user="urn:my-scripts"
+ xmlns:o="urn:schemas-microsoft-com:office:office"
+ xmlns:x="urn:schemas-microsoft-com:office:excel"
+ xmlns:ss="urn:schemas-microsoft-com:office:spreadsheet">
+
+  <xsl:key name="Tables" match="/*/*" use="local-name(.)" />
+  <xsl:template match="/">
+    <Workbook xmlns="urn:schemas-microsoft-com:office:spreadsheet"
+      xmlns:o="urn:schemas-microsoft-com:office:office"
+      xmlns:x="urn:schemas-microsoft-com:office:excel"
+      xmlns:ss="urn:schemas-microsoft-com:office:spreadsheet"
+      xmlns:html="http://www.w3.org/TR/REC-html40">
+      <Styles>
+        <Style ss:ID="s21">
+          <NumberFormat ss:Format="0"/>
+        </Style>
+      </Styles>
+
+
+      <xsl:for-each select="ScanJobResult/ExperimentResults/AssayResult">
+
+        <xsl:variable name="array_name" select="./@ID" />
+        <xsl:for-each select="*">
+
+          <!-- todo: probably can be done with for-each/select -->
+          <xsl:if test="starts-with(local-name(),'Channel')">
+
+            <!-- todo: my be ommit channel if there's just a single channel; maybe make it shorter -->
+            <xsl:variable name="channel_name" select="local-name()"/>
+
+            <Worksheet ss:Name="{$array_name}_{$channel_name}">
+
+              <xsl:if test = "not(./SpotResults)" >
+                <Table x:FullColumns="1" x:FullRows="1">
+                  <Row>
+                    <Cell>
+                      <Data ss:Type="String">
+                        <xsl:value-of select="./Status/@Message"/>
+                      </Data>
+                    </Cell>
+                  </Row>
+                </Table>
+              </xsl:if>
+
+              <xsl:if test = "./SpotResults" >
+
+                <Table x:FullColumns="1" x:FullRows="1">
+                  <Row>
+                    <Cell>
+                      <Data ss:Type="String">
+                        <xsl:text > ID </xsl:text>
+                      </Data>
+                    </Cell>
+					
+                    <xsl:for-each select="./SpotResults/Spot[1]/Result">
+						<xsl:if test = "./@Type = 'System.Boolean' or ./@Type = 'System.String' or ./@Type = 'System.Int32' or ./@Type = 'System.UInt32' or ./@Type = 'System.Double'">
+							<Cell>
+								<Data ss:Type="String">
+									<xsl:value-of select="./@Label"/>
+								</Data>
+							</Cell>							
+                        </xsl:if>
+                    </xsl:for-each>
+                  </Row>
+
+                  <xsl:for-each select="./SpotResults/Spot">
+                    <Row>
+                      <Cell>
+                        <Data ss:Type="Number">
+                          <xsl:value-of select="./@ID"/>
+                        </Data>
+                      </Cell>
+
+                      <xsl:for-each select="./Result">								
+						  <xsl:if test = "./@Type = 'System.Boolean'" >
+							  <Cell>
+								<Data ss:Type="Boolean">
+								  <xsl:if test = "starts-with(./@Value, 'True')" >1</xsl:if>
+								  <xsl:if test = "starts-with(./@Value, 'False')" >0</xsl:if>
+								</Data>
+							  </Cell>
+						  </xsl:if>
+						  <xsl:if test = "./@Type = 'System.String'" >
+							  <Cell>
+								<Data ss:Type="String">
+								  <xsl:value-of select="./@Value"/>
+								</Data>
+							  </Cell>
+						  </xsl:if>
+						  <xsl:if test = "./@Type = 'System.Int32' or ./@Type = 'System.UInt32' or ./@Type = 'System.Double'" >
+							  <Cell>
+								<Data ss:Type="Number">
+								  <xsl:value-of select="./@Value"/>
+								</Data>
+							  </Cell>
+						  </xsl:if>								
+                      </xsl:for-each>
+                    </Row>
+                  </xsl:for-each>
+
+                </Table>
+              </xsl:if>
+
+            </Worksheet>
+          </xsl:if>
+        </xsl:for-each>
+
+      </xsl:for-each>
+
+    </Workbook>
+  </xsl:template>
+
+</xsl:stylesheet>
diff --git a/example_data/xml_wo_parameters/220307_SN0801_CHECK-01_SL1,11,9,14_MS_1_1_A01.xml b/example_data/xml_wo_parameters/220307_SN0801_CHECK-01_SL1,11,9,14_MS_1_1_A01.xml
new file mode 100644
index 0000000..15e25c1
--- /dev/null
+++ b/example_data/xml_wo_parameters/220307_SN0801_CHECK-01_SL1,11,9,14_MS_1_1_A01.xml
@@ -0,0 +1,9297 @@
+<?xml version="1.0" encoding="utf-8"?>
+<AssayResult ID="A01" Type="Calibration Check_v1.2.4.3c">
+  <ReferencePatternResult Status="Valid" Rotation="0.23807670284076057" Scaling="0.998411582643245" PositionTopLeft.X="230.07833862304688" PositionTopLeft.Y="232.07130432128906" />
+  <RelationArrayToRefPattern OffsetMm.X="0.018938772094637457" OffsetMm.Y="-0.0071761016171074665" ScalingFactor="1.001991960802898" RotationAngleDeg="0" />
+  <ChannelConfig1>
+    <Status ErrorID="0" Message="no error" />
+    <ChannelDescription>Cy3/Cy5 Green</ChannelDescription>
+    <Timestamp>3/7/2022 5:31:47 PM</Timestamp>
+    <ImageFileName>220307_SN0801_CHECK-01_SL1,11,9,14_MS_1_1_A01_1.tif</ImageFileName>
+    <ImageResolutionPixPerMm>150.3716670323235</ImageResolutionPixPerMm>
+    <SystemImageResolutionPixPerMm>150.6109</SystemImageResolutionPixPerMm>
+    <Transform>
+      <M11>150.66990076589988</M11>
+      <M12>-0.62607054037768517</M12>
+      <M21>0.62607054037768517</M21>
+      <M22>150.66990076589988</M22>
+      <Dx>227.22602466270919</Dx>
+      <Dy>233.1385439330713</Dy>
+    </Transform>
+    <SpotResults>
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+        <Result Label="Spot.StdDev" Type="System.Double" Value="0.14573685500228903" />
+        <Result Label="Bkg.Sum" Type="System.UInt32" Value="20038311" />
+        <Result Label="Spot.Sum" Type="System.UInt32" Value="53627765" />
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+        <Result Label="Bkg.Median" Type="System.Double" Value="0.033951323720149536" />
+        <Result Label="Spot.Median" Type="System.Double" Value="0.034042877851529714" />
+        <Result Label="Bkg.StdDev" Type="System.Double" Value="0.0016870339717276644" />
+        <Result Label="Spot.StdDev" Type="System.Double" Value="0.0017029711880122758" />
+        <Result Label="Bkg.Sum" Type="System.UInt32" Value="2890943" />
+        <Result Label="Spot.Sum" Type="System.UInt32" Value="1288724" />
+        <Result Label="Bkg.Area" Type="System.UInt32" Value="1299" />
+        <Result Label="Spot.Area" Type="System.UInt32" Value="577" />
+        <Result Label="Spot.Sat. (%)" Type="System.UInt32" Value="0" />
+        <Result Label="Found" Type="System.Boolean" Value="False" />
+        <Result Label="Pos.Nom.X" Type="System.Int32" Value="704" />
+        <Result Label="Pos.Nom.Y" Type="System.Int32" Value="655" />
+        <Result Label="Dia." Type="System.Int32" Value="27" />
+        <Result Label="Id" Type="System.String" Value="" />
+        <Result Label="Name" Type="System.String" Value="" />
+        <Result Label="Rect." Type="System.Drawing.Rectangle" Value="0, 0, 0, 0" />
+        <Result Label="Contour" Type="System.Collections.ArrayList" ContentType="" Value="" />
+      </Spot>
+      <Spot ID="91">
+        <Result Label="Pos.X" Type="System.Int32" Value="225" />
+        <Result Label="Pos.Y" Type="System.Int32" Value="711" />
+        <Result Label="Bkg.Mean" Type="System.Double" Value="0.033858653647984" />
+        <Result Label="Spot.Mean" Type="System.Double" Value="0.041531899861293659" />
+        <Result Label="Bkg.Median" Type="System.Double" Value="0.033752956435492483" />
+        <Result Label="Spot.Median" Type="System.Double" Value="0.041886015106431675" />
+        <Result Label="Bkg.StdDev" Type="System.Double" Value="0.0025591112724578039" />
+        <Result Label="Spot.StdDev" Type="System.Double" Value="0.0042255717784965771" />
+        <Result Label="Bkg.Sum" Type="System.UInt32" Value="2882386" />
+        <Result Label="Spot.Sum" Type="System.UInt32" Value="2038623" />
+        <Result Label="Bkg.Area" Type="System.UInt32" Value="1299" />
+        <Result Label="Spot.Area" Type="System.UInt32" Value="749" />
+        <Result Label="Spot.Sat. (%)" Type="System.UInt32" Value="0" />
+        <Result Label="Found" Type="System.Boolean" Value="True" />
+        <Result Label="Pos.Nom.X" Type="System.Int32" Value="225" />
+        <Result Label="Pos.Nom.Y" Type="System.Int32" Value="706" />
+        <Result Label="Dia." Type="System.Int32" Value="31" />
+        <Result Label="Id" Type="System.String" Value="" />
+        <Result Label="Name" Type="System.String" Value="" />
+        <Result Label="Rect." Type="System.Drawing.Rectangle" Value="0, 0, 0, 0" />
+        <Result Label="Contour" Type="System.Collections.ArrayList" ContentType="" Value="" />
+      </Spot>
+      <Spot ID="92">
+        <Result Label="Pos.X" Type="System.Int32" Value="278" />
+        <Result Label="Pos.Y" Type="System.Int32" Value="706" />
+        <Result Label="Bkg.Mean" Type="System.Double" Value="0.033826937436189475" />
+        <Result Label="Spot.Mean" Type="System.Double" Value="0.03373074226150076" />
+        <Result Label="Bkg.Median" Type="System.Double" Value="0.033813992523079268" />
+        <Result Label="Spot.Median" Type="System.Double" Value="0.033859769588769358" />
+        <Result Label="Bkg.StdDev" Type="System.Double" Value="0.0022346646457274363" />
+        <Result Label="Spot.StdDev" Type="System.Double" Value="0.0020100406020616733" />
+        <Result Label="Bkg.Sum" Type="System.UInt32" Value="2879686" />
+        <Result Label="Spot.Sum" Type="System.UInt32" Value="1275484" />
+        <Result Label="Bkg.Area" Type="System.UInt32" Value="1299" />
+        <Result Label="Spot.Area" Type="System.UInt32" Value="577" />
+        <Result Label="Spot.Sat. (%)" Type="System.UInt32" Value="0" />
+        <Result Label="Found" Type="System.Boolean" Value="False" />
+        <Result Label="Pos.Nom.X" Type="System.Int32" Value="278" />
+        <Result Label="Pos.Nom.Y" Type="System.Int32" Value="706" />
+        <Result Label="Dia." Type="System.Int32" Value="27" />
+        <Result Label="Id" Type="System.String" Value="" />
+        <Result Label="Name" Type="System.String" Value="" />
+        <Result Label="Rect." Type="System.Drawing.Rectangle" Value="0, 0, 0, 0" />
+        <Result Label="Contour" Type="System.Collections.ArrayList" ContentType="" Value="" />
+      </Spot>
+      <Spot ID="93">
+        <Result Label="Pos.X" Type="System.Int32" Value="331" />
+        <Result Label="Pos.Y" Type="System.Int32" Value="706" />
+        <Result Label="Bkg.Mean" Type="System.Double" Value="0.033939342040138272" />
+        <Result Label="Spot.Mean" Type="System.Double" Value="0.0339497898843263" />
+        <Result Label="Bkg.Median" Type="System.Double" Value="0.033936064698252839" />
+        <Result Label="Spot.Median" Type="System.Double" Value="0.033920805676356143" />
+        <Result Label="Bkg.StdDev" Type="System.Double" Value="0.002291720399311744" />
+        <Result Label="Spot.StdDev" Type="System.Double" Value="0.0021655497584149512" />
+        <Result Label="Bkg.Sum" Type="System.UInt32" Value="2889255" />
+        <Result Label="Spot.Sum" Type="System.UInt32" Value="1283767" />
+        <Result Label="Bkg.Area" Type="System.UInt32" Value="1299" />
+        <Result Label="Spot.Area" Type="System.UInt32" Value="577" />
+        <Result Label="Spot.Sat. (%)" Type="System.UInt32" Value="0" />
+        <Result Label="Found" Type="System.Boolean" Value="False" />
+        <Result Label="Pos.Nom.X" Type="System.Int32" Value="331" />
+        <Result Label="Pos.Nom.Y" Type="System.Int32" Value="706" />
+        <Result Label="Dia." Type="System.Int32" Value="27" />
+        <Result Label="Id" Type="System.String" Value="" />
+        <Result Label="Name" Type="System.String" Value="" />
+        <Result Label="Rect." Type="System.Drawing.Rectangle" Value="0, 0, 0, 0" />
+        <Result Label="Contour" Type="System.Collections.ArrayList" ContentType="" Value="" />
+      </Spot>
+      <Spot ID="94">
+        <Result Label="Pos.X" Type="System.Int32" Value="384" />
+        <Result Label="Pos.Y" Type="System.Int32" Value="707" />
+        <Result Label="Bkg.Mean" Type="System.Double" Value="0.034030919665008673" />
+        <Result Label="Spot.Mean" Type="System.Double" Value="0.034173835696299983" />
+        <Result Label="Bkg.Median" Type="System.Double" Value="0.033936064698252839" />
+        <Result Label="Spot.Median" Type="System.Double" Value="0.0341039139391165" />
+        <Result Label="Bkg.StdDev" Type="System.Double" Value="0.0023107825514044104" />
+        <Result Label="Spot.StdDev" Type="System.Double" Value="0.0024676141694206259" />
+        <Result Label="Bkg.Sum" Type="System.UInt32" Value="2897051" />
+        <Result Label="Spot.Sum" Type="System.UInt32" Value="1292239" />
+        <Result Label="Bkg.Area" Type="System.UInt32" Value="1299" />
+        <Result Label="Spot.Area" Type="System.UInt32" Value="577" />
+        <Result Label="Spot.Sat. (%)" Type="System.UInt32" Value="0" />
+        <Result Label="Found" Type="System.Boolean" Value="False" />
+        <Result Label="Pos.Nom.X" Type="System.Int32" Value="384" />
+        <Result Label="Pos.Nom.Y" Type="System.Int32" Value="707" />
+        <Result Label="Dia." Type="System.Int32" Value="27" />
+        <Result Label="Id" Type="System.String" Value="" />
+        <Result Label="Name" Type="System.String" Value="" />
+        <Result Label="Rect." Type="System.Drawing.Rectangle" Value="0, 0, 0, 0" />
+        <Result Label="Contour" Type="System.Collections.ArrayList" ContentType="" Value="" />
+      </Spot>
+      <Spot ID="95">
+        <Result Label="Pos.X" Type="System.Int32" Value="438" />
+        <Result Label="Pos.Y" Type="System.Int32" Value="707" />
+        <Result Label="Bkg.Mean" Type="System.Double" Value="0.034119983486425726" />
+        <Result Label="Spot.Mean" Type="System.Double" Value="0.034174999295890018" />
+        <Result Label="Bkg.Median" Type="System.Double" Value="0.034180209048599988" />
+        <Result Label="Spot.Median" Type="System.Double" Value="0.034164950026703285" />
+        <Result Label="Bkg.StdDev" Type="System.Double" Value="0.002361494392557441" />
+        <Result Label="Spot.StdDev" Type="System.Double" Value="0.0022742901452135781" />
+        <Result Label="Bkg.Sum" Type="System.UInt32" Value="2904633" />
+        <Result Label="Spot.Sum" Type="System.UInt32" Value="1292283" />
+        <Result Label="Bkg.Area" Type="System.UInt32" Value="1299" />
+        <Result Label="Spot.Area" Type="System.UInt32" Value="577" />
+        <Result Label="Spot.Sat. (%)" Type="System.UInt32" Value="0" />
+        <Result Label="Found" Type="System.Boolean" Value="False" />
+        <Result Label="Pos.Nom.X" Type="System.Int32" Value="438" />
+        <Result Label="Pos.Nom.Y" Type="System.Int32" Value="707" />
+        <Result Label="Dia." Type="System.Int32" Value="27" />
+        <Result Label="Id" Type="System.String" Value="" />
+        <Result Label="Name" Type="System.String" Value="" />
+        <Result Label="Rect." Type="System.Drawing.Rectangle" Value="0, 0, 0, 0" />
+        <Result Label="Contour" Type="System.Collections.ArrayList" ContentType="" Value="" />
+      </Spot>
+      <Spot ID="96">
+        <Result Label="Pos.X" Type="System.Int32" Value="491" />
+        <Result Label="Pos.Y" Type="System.Int32" Value="707" />
+        <Result Label="Bkg.Mean" Type="System.Double" Value="0.034393165790682516" />
+        <Result Label="Spot.Mean" Type="System.Double" Value="0.0349565415387203" />
+        <Result Label="Bkg.Median" Type="System.Double" Value="0.034409094377050434" />
+        <Result Label="Spot.Median" Type="System.Double" Value="0.03492790112153811" />
+        <Result Label="Bkg.StdDev" Type="System.Double" Value="0.0020201469611310138" />
+        <Result Label="Spot.StdDev" Type="System.Double" Value="0.0020292780357785228" />
+        <Result Label="Bkg.Sum" Type="System.UInt32" Value="2927889" />
+        <Result Label="Spot.Sum" Type="System.UInt32" Value="1321836" />
+        <Result Label="Bkg.Area" Type="System.UInt32" Value="1299" />
+        <Result Label="Spot.Area" Type="System.UInt32" Value="577" />
+        <Result Label="Spot.Sat. (%)" Type="System.UInt32" Value="0" />
+        <Result Label="Found" Type="System.Boolean" Value="False" />
+        <Result Label="Pos.Nom.X" Type="System.Int32" Value="491" />
+        <Result Label="Pos.Nom.Y" Type="System.Int32" Value="707" />
+        <Result Label="Dia." Type="System.Int32" Value="27" />
+        <Result Label="Id" Type="System.String" Value="" />
+        <Result Label="Name" Type="System.String" Value="" />
+        <Result Label="Rect." Type="System.Drawing.Rectangle" Value="0, 0, 0, 0" />
+        <Result Label="Contour" Type="System.Collections.ArrayList" ContentType="" Value="" />
+      </Spot>
+      <Spot ID="97">
+        <Result Label="Pos.X" Type="System.Int32" Value="544" />
+        <Result Label="Pos.Y" Type="System.Int32" Value="707" />
+        <Result Label="Bkg.Mean" Type="System.Double" Value="0.03406688819853268" />
+        <Result Label="Spot.Mean" Type="System.Double" Value="0.034107140283434353" />
+        <Result Label="Bkg.Median" Type="System.Double" Value="0.034073395895323107" />
+        <Result Label="Spot.Median" Type="System.Double" Value="0.0341039139391165" />
+        <Result Label="Bkg.StdDev" Type="System.Double" Value="0.0016337542551315366" />
+        <Result Label="Spot.StdDev" Type="System.Double" Value="0.00161228372926031" />
+        <Result Label="Bkg.Sum" Type="System.UInt32" Value="2900113" />
+        <Result Label="Spot.Sum" Type="System.UInt32" Value="1289717" />
+        <Result Label="Bkg.Area" Type="System.UInt32" Value="1299" />
+        <Result Label="Spot.Area" Type="System.UInt32" Value="577" />
+        <Result Label="Spot.Sat. (%)" Type="System.UInt32" Value="0" />
+        <Result Label="Found" Type="System.Boolean" Value="False" />
+        <Result Label="Pos.Nom.X" Type="System.Int32" Value="544" />
+        <Result Label="Pos.Nom.Y" Type="System.Int32" Value="707" />
+        <Result Label="Dia." Type="System.Int32" Value="27" />
+        <Result Label="Id" Type="System.String" Value="" />
+        <Result Label="Name" Type="System.String" Value="" />
+        <Result Label="Rect." Type="System.Drawing.Rectangle" Value="0, 0, 0, 0" />
+        <Result Label="Contour" Type="System.Collections.ArrayList" ContentType="" Value="" />
+      </Spot>
+      <Spot ID="98">
+        <Result Label="Pos.X" Type="System.Int32" Value="597" />
+        <Result Label="Pos.Y" Type="System.Int32" Value="707" />
+        <Result Label="Bkg.Mean" Type="System.Double" Value="0.034090698850868788" />
+        <Result Label="Spot.Mean" Type="System.Double" Value="0.034049594994617689" />
+        <Result Label="Bkg.Median" Type="System.Double" Value="0.034119172961013196" />
+        <Result Label="Spot.Median" Type="System.Double" Value="0.034012359807736321" />
+        <Result Label="Bkg.StdDev" Type="System.Double" Value="0.0015307279153317776" />
+        <Result Label="Spot.StdDev" Type="System.Double" Value="0.0015931978491550577" />
+        <Result Label="Bkg.Sum" Type="System.UInt32" Value="2902140" />
+        <Result Label="Spot.Sum" Type="System.UInt32" Value="1287541" />
+        <Result Label="Bkg.Area" Type="System.UInt32" Value="1299" />
+        <Result Label="Spot.Area" Type="System.UInt32" Value="577" />
+        <Result Label="Spot.Sat. (%)" Type="System.UInt32" Value="0" />
+        <Result Label="Found" Type="System.Boolean" Value="False" />
+        <Result Label="Pos.Nom.X" Type="System.Int32" Value="597" />
+        <Result Label="Pos.Nom.Y" Type="System.Int32" Value="707" />
+        <Result Label="Dia." Type="System.Int32" Value="27" />
+        <Result Label="Id" Type="System.String" Value="" />
+        <Result Label="Name" Type="System.String" Value="" />
+        <Result Label="Rect." Type="System.Drawing.Rectangle" Value="0, 0, 0, 0" />
+        <Result Label="Contour" Type="System.Collections.ArrayList" ContentType="" Value="" />
+      </Spot>
+      <Spot ID="99">
+        <Result Label="Pos.X" Type="System.Int32" Value="650" />
+        <Result Label="Pos.Y" Type="System.Int32" Value="708" />
+        <Result Label="Bkg.Mean" Type="System.Double" Value="0.034151030133749025" />
+        <Result Label="Spot.Mean" Type="System.Double" Value="0.034056629483048405" />
+        <Result Label="Bkg.Median" Type="System.Double" Value="0.034180209048599988" />
+        <Result Label="Spot.Median" Type="System.Double" Value="0.034012359807736321" />
+        <Result Label="Bkg.StdDev" Type="System.Double" Value="0.0016456406569995215" />
+        <Result Label="Spot.StdDev" Type="System.Double" Value="0.0015669767891942482" />
+        <Result Label="Bkg.Sum" Type="System.UInt32" Value="2907276" />
+        <Result Label="Spot.Sum" Type="System.UInt32" Value="1287807" />
+        <Result Label="Bkg.Area" Type="System.UInt32" Value="1299" />
+        <Result Label="Spot.Area" Type="System.UInt32" Value="577" />
+        <Result Label="Spot.Sat. (%)" Type="System.UInt32" Value="0" />
+        <Result Label="Found" Type="System.Boolean" Value="False" />
+        <Result Label="Pos.Nom.X" Type="System.Int32" Value="650" />
+        <Result Label="Pos.Nom.Y" Type="System.Int32" Value="708" />
+        <Result Label="Dia." Type="System.Int32" Value="27" />
+        <Result Label="Id" Type="System.String" Value="" />
+        <Result Label="Name" Type="System.String" Value="" />
+        <Result Label="Rect." Type="System.Drawing.Rectangle" Value="0, 0, 0, 0" />
+        <Result Label="Contour" Type="System.Collections.ArrayList" ContentType="" Value="" />
+      </Spot>
+      <Spot ID="100">
+        <Result Label="Pos.X" Type="System.Int32" Value="703" />
+        <Result Label="Pos.Y" Type="System.Int32" Value="710" />
+        <Result Label="Bkg.Mean" Type="System.Double" Value="0.034106697917707353" />
+        <Result Label="Spot.Mean" Type="System.Double" Value="0.040565799569645962" />
+        <Result Label="Bkg.Median" Type="System.Double" Value="0.034180209048599988" />
+        <Result Label="Spot.Median" Type="System.Double" Value="0.040650034332799269" />
+        <Result Label="Bkg.StdDev" Type="System.Double" Value="0.001791438213104119" />
+        <Result Label="Spot.StdDev" Type="System.Double" Value="0.0035525568622759096" />
+        <Result Label="Bkg.Sum" Type="System.UInt32" Value="2903502" />
+        <Result Label="Spot.Sum" Type="System.UInt32" Value="2288951" />
+        <Result Label="Bkg.Area" Type="System.UInt32" Value="1299" />
+        <Result Label="Spot.Area" Type="System.UInt32" Value="861" />
+        <Result Label="Spot.Sat. (%)" Type="System.UInt32" Value="0" />
+        <Result Label="Found" Type="System.Boolean" Value="True" />
+        <Result Label="Pos.Nom.X" Type="System.Int32" Value="703" />
+        <Result Label="Pos.Nom.Y" Type="System.Int32" Value="708" />
+        <Result Label="Dia." Type="System.Int32" Value="33" />
+        <Result Label="Id" Type="System.String" Value="" />
+        <Result Label="Name" Type="System.String" Value="" />
+        <Result Label="Rect." Type="System.Drawing.Rectangle" Value="0, 0, 0, 0" />
+        <Result Label="Contour" Type="System.Collections.ArrayList" ContentType="" Value="" />
+      </Spot>
+    </SpotResults>
+    <Images>
+      <Microarray>
+        <Image_1>220307_SN0801_CHECK-01_SL1,11,9,14_MS_1_1_A01_4.tif</Image_1>
+      </Microarray>
+    </Images>
+  </ChannelConfig4>
+</AssayResult>
\ No newline at end of file
diff --git a/tests/conftest.py b/tests/conftest.py
index 19d2ce6..8e4d43c 100644
--- a/tests/conftest.py
+++ b/tests/conftest.py
@@ -5,9 +5,10 @@ from pathlib import Path
 import pandas
 import pytest
 
-EXAMPLE_DIR_WO_PARAMS = "mtp_wo_parameters"
-EXAMPLE_DIR_WITH_PARAMS = "mtp_with_parameters"
-EXAMPLE_DIR_WITH_RECORD = "record_time"
+EXAMPLE_DIR_CSV_WO_PARAMS = "csv_wo_parameters"
+EXAMPLE_DIR_CSV_WITH_PARAMS = "csv_with_parameters"
+EXAMPLE_DIR_XML_WO_RECORD = "xml_wo_parameters"
+EXAMPLE_DIR_XML_WITH_RECORD = "xml_wo_parameters"
 
 
 @pytest.fixture(scope="session")
@@ -18,7 +19,7 @@ def example_dir(request):
 
 @pytest.fixture
 def example_file(example_dir):
-    data_dir = example_dir / EXAMPLE_DIR_WO_PARAMS
+    data_dir = example_dir / EXAMPLE_DIR_CSV_WO_PARAMS
     yield data_dir / "160218_SG2-013-001_Regen1_Cy3-100_1_A1_1.csv"
 
 
@@ -93,16 +94,16 @@ def normalization_data_frame():
 
 @pytest.fixture(scope="session")
 def parsed_data_frame_with_params(example_dir):
-    from sensospot_parser.parser import parse_folder
+    from sensospot_parser.csv_parser import parse_folder
 
-    return parse_folder(example_dir / EXAMPLE_DIR_WITH_PARAMS)
+    return parse_folder(example_dir / EXAMPLE_DIR_CSV_WITH_PARAMS)
 
 
 @pytest.fixture(scope="session")
 def parsed_data_frame_without_params(example_dir):
-    from sensospot_parser.parser import parse_folder
+    from sensospot_parser.csv_parser import parse_folder
 
-    return parse_folder(example_dir / EXAMPLE_DIR_WO_PARAMS)
+    return parse_folder(example_dir / EXAMPLE_DIR_CSV_WO_PARAMS)
 
 
 @pytest.fixture
diff --git a/tests/test_csv_parser.py b/tests/test_csv_parser.py
index 04b0190..e5f3cf6 100644
--- a/tests/test_csv_parser.py
+++ b/tests/test_csv_parser.py
@@ -4,18 +4,18 @@
 import numpy
 import pytest
 
-from .conftest import EXAMPLE_DIR_WO_PARAMS, EXAMPLE_DIR_WITH_PARAMS
+from .conftest import EXAMPLE_DIR_CSV_WO_PARAMS, EXAMPLE_DIR_CSV_WITH_PARAMS
 
 
 @pytest.mark.parametrize(
     "sub_dir, file_name",
     [
         (
-            EXAMPLE_DIR_WO_PARAMS,
+            EXAMPLE_DIR_CSV_WO_PARAMS,
             "160218_SG2-013-001_Regen1_Cy3-100_1_A1_1.csv",
         ),
         (
-            EXAMPLE_DIR_WITH_PARAMS,
+            EXAMPLE_DIR_CSV_WITH_PARAMS,
             "160210_SG2-010-001_Regen_cy3100_1_A1_1.csv",
         ),
     ],
@@ -181,7 +181,7 @@ def test_parse_file(example_file):
     assert result["Well.Row"][0] == "A"
     assert result["Well.Column"][0] == 1
     assert result["Exposure.Id"][0] == 1
-    assert result["Analysis.Name"][0] == "mtp_wo_parameters"
+    assert result["Analysis.Name"][0] == "csv_wo_parameters"
     file_name = "160218_SG2-013-001_Regen1_Cy3-100_1_A1_1.tif"
     assert result["Analysis.Image"][0] == file_name
 
@@ -190,7 +190,9 @@ def test_parse_file_raises_error(example_dir):
     from sensospot_parser.csv_parser import parse_file
 
     csv_file = (
-        example_dir / EXAMPLE_DIR_WITH_PARAMS / "should_raise_value_error.csv"
+        example_dir
+        / EXAMPLE_DIR_CSV_WITH_PARAMS
+        / "should_raise_value_error.csv"
     )
 
     with pytest.raises(ValueError):
@@ -211,7 +213,9 @@ def test_parse_file_silenced_returns_none_on_error(example_dir):
     from sensospot_parser.csv_parser import _parse_file_silenced
 
     csv_file = (
-        example_dir / EXAMPLE_DIR_WITH_PARAMS / "should_raise_value_error.csv"
+        example_dir
+        / EXAMPLE_DIR_CSV_WITH_PARAMS
+        / "should_raise_value_error.csv"
     )
 
     result = _parse_file_silenced(csv_file)
@@ -232,7 +236,7 @@ def test_parse_file_silenced_returns_none_on_error(example_dir):
 def testparse_multiple_files_ok(example_dir, file_list):
     from sensospot_parser.csv_parser import parse_multiple_files
 
-    sub_dir = example_dir / EXAMPLE_DIR_WO_PARAMS
+    sub_dir = example_dir / EXAMPLE_DIR_CSV_WO_PARAMS
     files = [sub_dir / file for file in file_list]
 
     data_frame = parse_multiple_files(files)
@@ -263,7 +267,7 @@ def testparse_multiple_files_empty_array(example_dir):
 def test_find_csv_files(example_dir):
     from sensospot_parser.csv_parser import find_csv_files
 
-    result = list(find_csv_files(example_dir / EXAMPLE_DIR_WITH_PARAMS))
+    result = list(find_csv_files(example_dir / EXAMPLE_DIR_CSV_WITH_PARAMS))
 
     assert len(result) == (36 * 3) + 1  # 36 wells, 3 exposure + one error file
     assert all(str(item).endswith(".csv") for item in result)
@@ -273,7 +277,7 @@ def test_find_csv_files(example_dir):
 def test_parse_folder_no_datetime_records(example_dir):
     from sensospot_parser.csv_parser import parse_folder
 
-    data_frame = parse_folder(example_dir / EXAMPLE_DIR_WITH_PARAMS)
+    data_frame = parse_folder(example_dir / EXAMPLE_DIR_CSV_WITH_PARAMS)
 
     assert len(data_frame) == 36 * 3 * 100
     assert len(data_frame["Well.Row"].unique()) == 3
@@ -288,7 +292,7 @@ def test_parse_folder_no_datetime_records(example_dir):
 def test_sanity_check_ok(example_dir):
     from sensospot_parser.csv_parser import _sanity_check, parse_multiple_files
 
-    sub_dir = example_dir / EXAMPLE_DIR_WO_PARAMS
+    sub_dir = example_dir / EXAMPLE_DIR_CSV_WO_PARAMS
     file_list = [
         "160218_SG2-013-001_Regen1_Cy3-100_1_A1_1.csv",
         "160218_SG2-013-001_Regen1_Cy3-100_1_A1_2.csv",
@@ -304,7 +308,7 @@ def test_sanity_check_ok(example_dir):
 def test_sanity_check_raises_value_error(example_dir):
     from sensospot_parser.csv_parser import _sanity_check, parse_multiple_files
 
-    sub_dir = example_dir / EXAMPLE_DIR_WO_PARAMS
+    sub_dir = example_dir / EXAMPLE_DIR_CSV_WO_PARAMS
     file_list = [
         "160218_SG2-013-001_Regen1_Cy3-100_1_A1_1.csv",
         "160218_SG2-013-001_Regen1_Cy3-100_1_A1_2.csv",
diff --git a/tests/test_parameters.py b/tests/test_parameters.py
index b91fd92..ea291e4 100644
--- a/tests/test_parameters.py
+++ b/tests/test_parameters.py
@@ -1,12 +1,12 @@
 import pandas
 
-from .conftest import EXAMPLE_DIR_WO_PARAMS, EXAMPLE_DIR_WITH_PARAMS
+from .conftest import EXAMPLE_DIR_CSV_WO_PARAMS, EXAMPLE_DIR_CSV_WITH_PARAMS
 
 
 def test_search_params_file_ok(example_dir):
     from sensospot_parser.parameters import _search_params_file
 
-    result = _search_params_file(example_dir / EXAMPLE_DIR_WITH_PARAMS)
+    result = _search_params_file(example_dir / EXAMPLE_DIR_CSV_WITH_PARAMS)
 
     assert result.suffix == ".svexp"
 
@@ -14,7 +14,7 @@ def test_search_params_file_ok(example_dir):
 def test_search_params_file_no_parameters_folder(example_dir):
     from sensospot_parser.parameters import _search_params_file
 
-    result = _search_params_file(example_dir / EXAMPLE_DIR_WO_PARAMS)
+    result = _search_params_file(example_dir / EXAMPLE_DIR_CSV_WO_PARAMS)
 
     assert result is None
 
@@ -36,7 +36,7 @@ def test_parse_channel_info(example_dir):
         _parse_measurement_params,
     )
 
-    params = _search_params_file(example_dir / EXAMPLE_DIR_WITH_PARAMS)
+    params = _search_params_file(example_dir / EXAMPLE_DIR_CSV_WITH_PARAMS)
     result = _parse_measurement_params(params)
 
     expected = pandas.DataFrame(
@@ -53,7 +53,7 @@ def test_parse_channel_info(example_dir):
 def test_get_measurement_params_file_found(example_dir):
     from sensospot_parser.parameters import get_measurement_params
 
-    result = get_measurement_params(example_dir / EXAMPLE_DIR_WITH_PARAMS)
+    result = get_measurement_params(example_dir / EXAMPLE_DIR_CSV_WITH_PARAMS)
 
     expected = pandas.DataFrame(
         {
@@ -69,7 +69,7 @@ def test_get_measurement_params_file_found(example_dir):
 def test_get_measurement_params_file_not_found(example_dir):
     from sensospot_parser.parameters import get_measurement_params
 
-    result = get_measurement_params(example_dir / EXAMPLE_DIR_WO_PARAMS)
+    result = get_measurement_params(example_dir / EXAMPLE_DIR_CSV_WO_PARAMS)
 
     assert result is None
 
@@ -77,7 +77,7 @@ def test_get_measurement_params_file_not_found(example_dir):
 def test_add_measurement_parameters_with_params_file(exposure_df, example_dir):
     from sensospot_parser.parameters import add_measurement_parameters
 
-    folder = example_dir / EXAMPLE_DIR_WITH_PARAMS
+    folder = example_dir / EXAMPLE_DIR_CSV_WITH_PARAMS
     exposure_df = add_measurement_parameters(exposure_df, folder)
 
     expected = [(1, "green", 100), (2, "red", 150), (3, "red", 15)]
@@ -93,7 +93,7 @@ def test_add_measurement_parameters_without_params_file(
 ):
     from sensospot_parser.parameters import add_measurement_parameters
 
-    folder = example_dir / EXAMPLE_DIR_WO_PARAMS
+    folder = example_dir / EXAMPLE_DIR_CSV_WO_PARAMS
     exposure_df = add_measurement_parameters(exposure_df, folder)
 
     for exposure_id in range(1, 4):