You can not select more than 25 topics
Topics must start with a letter or number, can include dashes ('-') and can be up to 35 characters long.
97 lines
2.4 KiB
97 lines
2.4 KiB
""" Column name definitions """ |
|
|
|
# original, unmodified column names |
|
RAW_DATA_POS_X = "Pos.X" |
|
RAW_DATA_POS_Y = "Pos.Y" |
|
RAW_DATA_BKG_MEAN = "Bkg.Mean" |
|
RAW_DATA_SPOT_MEAN = "Spot.Mean" |
|
RAW_DATA_BKG_MEDIAN = "Bkg.Median" |
|
RAW_DATA_SPOT_MEDIAN = "Spot.Median" |
|
RAW_DATA_BKG_STDDEV = "Bkg.StdDev" |
|
RAW_DATA_SPOT_STDDEV = "Spot.StdDev" |
|
RAW_DATA_BKG_SUM = "Bkg.Sum" |
|
RAW_DATA_SPOT_SUM = "Spot.Sum" |
|
RAW_DATA_BKG_AREA = "Bkg.Area" |
|
RAW_DATA_SPOT_AREA = "Spot.Area" |
|
RAW_DATA_POS_NOM_X = "Pos.Nom.X" |
|
RAW_DATA_POS_NOM_Y = "Pos.Nom.Y" |
|
|
|
# replacement column names |
|
RAW_DATA_POS_ID = "Pos.Id" |
|
RAW_DATA_SPOT_FOUND = "Spot.Found" |
|
RAW_DATA_SPOT_DIAMETER = "Spot.Diameter" |
|
RAW_DATA_SPOT_SAT = "Spot.Saturation" |
|
|
|
|
|
RAW_DATA_COLUMNS_RENAME_MAP = { |
|
" ID ": RAW_DATA_POS_ID, |
|
"Found": RAW_DATA_SPOT_FOUND, |
|
"Dia.": RAW_DATA_SPOT_DIAMETER, |
|
"Spot.Sat. (%)": RAW_DATA_SPOT_SAT, |
|
} |
|
|
|
# meta data extracted from filename and path |
|
META_DATA_ANALYSIS_NAME = "Analysis.Name" |
|
META_DATA_WELL_NAME = "Well.Name" |
|
META_DATA_WELL_ROW = "Well.Row" |
|
META_DATA_WELL_COLUMN = "Well.Column" |
|
META_DATA_EXPOSURE_ID = "Exposure.Id" |
|
|
|
# parsed measurement parameter information (optional, from parameters folder) |
|
META_DATA_PARAMETERS_CHANNEL = "Parameters.Channel" |
|
META_DATA_PARAMETERS_TIME = "Parameters.Time" |
|
|
|
PARSED_DATA_COLUMN_SET = { |
|
RAW_DATA_POS_X, |
|
RAW_DATA_POS_Y, |
|
RAW_DATA_BKG_MEAN, |
|
RAW_DATA_SPOT_MEAN, |
|
RAW_DATA_BKG_MEDIAN, |
|
RAW_DATA_SPOT_MEDIAN, |
|
RAW_DATA_BKG_STDDEV, |
|
RAW_DATA_SPOT_STDDEV, |
|
RAW_DATA_BKG_SUM, |
|
RAW_DATA_SPOT_SUM, |
|
RAW_DATA_BKG_AREA, |
|
RAW_DATA_SPOT_AREA, |
|
RAW_DATA_SPOT_SAT, |
|
RAW_DATA_POS_NOM_X, |
|
RAW_DATA_POS_NOM_Y, |
|
RAW_DATA_POS_ID, |
|
RAW_DATA_SPOT_FOUND, |
|
RAW_DATA_SPOT_DIAMETER, |
|
META_DATA_ANALYSIS_NAME, |
|
META_DATA_WELL_NAME, |
|
META_DATA_WELL_ROW, |
|
META_DATA_WELL_COLUMN, |
|
META_DATA_EXPOSURE_ID, |
|
META_DATA_PARAMETERS_CHANNEL, |
|
META_DATA_PARAMETERS_TIME, |
|
} |
|
|
|
# list of columns to ensure a pandas numeric type |
|
RAW_DATA_NUMERIC_COLUMNS = { |
|
RAW_DATA_BKG_MEAN, |
|
RAW_DATA_SPOT_MEAN, |
|
RAW_DATA_BKG_MEDIAN, |
|
RAW_DATA_SPOT_MEDIAN, |
|
RAW_DATA_BKG_STDDEV, |
|
RAW_DATA_SPOT_STDDEV, |
|
RAW_DATA_BKG_SUM, |
|
RAW_DATA_SPOT_SUM, |
|
} |
|
|
|
# common indexes |
|
|
|
INDEX_COLUMNS_WELL = ( |
|
META_DATA_ANALYSIS_NAME, |
|
META_DATA_WELL_NAME, |
|
META_DATA_WELL_ROW, |
|
) |
|
|
|
INDEX_COLUMNS_POS = ( |
|
META_DATA_ANALYSIS_NAME, |
|
META_DATA_WELL_NAME, |
|
META_DATA_WELL_ROW, |
|
RAW_DATA_POS_ID, |
|
)
|
|
|