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99 lines
3.1 KiB
99 lines
3.1 KiB
""" Column name definitions """ |
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# original, unmodified column names |
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RAW_DATA_POS_X = "Pos.X" |
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RAW_DATA_POS_Y = "Pos.Y" |
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RAW_DATA_BKG_MEAN = "Bkg.Mean" |
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RAW_DATA_SPOT_MEAN = "Spot.Mean" |
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RAW_DATA_BKG_MEDIAN = "Bkg.Median" |
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RAW_DATA_SPOT_MEDIAN = "Spot.Median" |
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RAW_DATA_BKG_STDDEV = "Bkg.StdDev" |
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RAW_DATA_SPOT_STDDEV = "Spot.StdDev" |
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RAW_DATA_BKG_SUM = "Bkg.Sum" |
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RAW_DATA_SPOT_SUM = "Spot.Sum" |
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RAW_DATA_BKG_AREA = "Bkg.Area" |
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RAW_DATA_SPOT_AREA = "Spot.Area" |
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RAW_DATA_POS_NOM_X = "Pos.Nom.X" |
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RAW_DATA_POS_NOM_Y = "Pos.Nom.Y" |
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# replacement column names |
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RAW_DATA_POS_ID = "Pos.Id" |
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RAW_DATA_SPOT_FOUND = "Spot.Found" |
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RAW_DATA_SPOT_DIAMETER = "Spot.Diameter" |
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RAW_DATA_SPOT_SAT = "Spot.Saturation" |
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RAW_DATA_COLUMNS_RENAME_MAP = { |
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" ID ": RAW_DATA_POS_ID, |
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"Found": RAW_DATA_SPOT_FOUND, |
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"Dia.": RAW_DATA_SPOT_DIAMETER, |
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"Spot.Sat. (%)": RAW_DATA_SPOT_SAT, |
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} |
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# meta data extracted from filename |
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META_DATA_WELL_ROW = "Well.Row" |
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META_DATA_WELL_COLUMN = "Well.Column" |
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META_DATA_EXPOSURE_ID = "Exposure.Id" |
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# parsed measurement parameter information (optional, from parameters folder) |
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META_DATA_PARAMETERS_CHANNEL = "Parameters.Channel" |
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META_DATA_PARAMETERS_TIME = "Parameters.Time" |
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RAW_DATA_COLUMN_SET = { |
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RAW_DATA_POS_X, |
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RAW_DATA_POS_Y, |
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RAW_DATA_BKG_MEAN, |
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RAW_DATA_SPOT_MEAN, |
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RAW_DATA_BKG_MEDIAN, |
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RAW_DATA_SPOT_MEDIAN, |
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RAW_DATA_BKG_STDDEV, |
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RAW_DATA_SPOT_STDDEV, |
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RAW_DATA_BKG_SUM, |
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RAW_DATA_SPOT_SUM, |
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RAW_DATA_BKG_AREA, |
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RAW_DATA_SPOT_AREA, |
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RAW_DATA_SPOT_SAT, |
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RAW_DATA_POS_NOM_X, |
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RAW_DATA_POS_NOM_Y, |
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RAW_DATA_POS_ID, |
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RAW_DATA_SPOT_FOUND, |
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RAW_DATA_SPOT_DIAMETER, |
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META_DATA_WELL_ROW, |
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META_DATA_WELL_COLUMN, |
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META_DATA_EXPOSURE_ID, |
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META_DATA_PARAMETERS_CHANNEL, |
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META_DATA_PARAMETERS_TIME, |
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} |
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# settings for nominal exposure info |
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SETTINGS_EXPOSURE_CHANNEL = "Exposure.Channel" |
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SETTINGS_EXPOSURE_TIME = "Exposure.Time" |
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# calculated value for dynamic range normalization |
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CALC_SPOT_OVERFLOW = "Calc.Spot.Overflow" |
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# settings for normalized exposure time |
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SETTINGS_NORMALIZED_EXPOSURE_TIME = "Settings.Normalized.Exposure.Time" |
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# normalized columns |
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n_prefix = "Calc.Normalized." |
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CALC_NORMALIZED_BKG_MEAN = f"{n_prefix}{RAW_DATA_BKG_MEAN}" |
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CALC_NORMALIZED_SPOT_MEAN = f"{n_prefix}{RAW_DATA_SPOT_MEAN}" |
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CALC_NORMALIZED_BKG_MEDIAN = f"{n_prefix}{RAW_DATA_BKG_MEDIAN}" |
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CALC_NORMALIZED_SPOT_MEDIAN = f"{n_prefix}{RAW_DATA_SPOT_MEDIAN}" |
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CALC_NORMALIZED_BKG_STDDEV = f"{n_prefix}{RAW_DATA_BKG_STDDEV}" |
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CALC_NORMALIZED_SPOT_STDDEV = f"{n_prefix}{RAW_DATA_SPOT_STDDEV}" |
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CALC_NORMALIZED_BKG_SUM = f"{n_prefix}{RAW_DATA_BKG_SUM}" |
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CALC_NORMALIZED_SPOT_SUM = f"{n_prefix}{RAW_DATA_SPOT_SUM}" |
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# what columns to convert for normalization |
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RAW_DATA_NORMALIZATION_MAP = { |
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RAW_DATA_BKG_MEAN: CALC_NORMALIZED_BKG_MEAN, |
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RAW_DATA_SPOT_MEAN: CALC_NORMALIZED_SPOT_MEAN, |
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RAW_DATA_BKG_MEDIAN: CALC_NORMALIZED_BKG_MEDIAN, |
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RAW_DATA_SPOT_MEDIAN: CALC_NORMALIZED_SPOT_MEDIAN, |
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RAW_DATA_BKG_STDDEV: CALC_NORMALIZED_BKG_STDDEV, |
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RAW_DATA_SPOT_STDDEV: CALC_NORMALIZED_SPOT_STDDEV, |
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RAW_DATA_BKG_SUM: CALC_NORMALIZED_BKG_SUM, |
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RAW_DATA_SPOT_SUM: CALC_NORMALIZED_SPOT_SUM, |
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}
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