Holger Frey
872381382a
Changes after linting with "ruff"
2 years ago
Holger Frey
988c7562d9
renamed some functions in "csv_parser" module to have more explicit names
2 years ago
Holger Frey
8644a25d78
moved _cleanup_data_columns() function to "columns" module
...
by moving this function it can be easily reused in the upcoming "xml_parser" module
2 years ago
Holger Frey
99d0e0fa4e
renamed test cases and added a new one for xml parsing
2 years ago
Holger Frey
938b063069
removed the "recordtime" module
...
The "recordtime" module uses the assay result xml file for retrieving the Analyses.Datetime value.
This value is only available in the assay result xml.
Since the "parse_csv" module will only be a backup if this xml file is not present, a separate parser for the Analysis.Datetime is not needed anymore
2 years ago
Holger Frey
873091504c
renamed the "parser" module to "csv_parser"
...
The "csv_parser" module will be used as a backup if the analysis xml file is not present.
2 years ago
Holger Frey
78c5db031a
Added image name and recording datetime to the results
...
This two columns where added:
- Analysis.Image
- Analysis.Datetime
When parsing a folder, the image names and (if available) the date and time of the recording is added to the resulting data frame.
If the recording datetime is not available, the resulting column will contain NaN
2 years ago
Holger Frey
fde3513809
renamed package to 'sensospot_parser'
3 years ago
Holger Frey
4c69ef457b
added type hints and more docs to parser
3 years ago
Holger Frey
75ac4740a5
fixed sanity check
3 years ago
Holger Frey
71ad6c7977
bumped version
3 years ago
Holger Frey
fa94fbc6a5
added silenced parsing of data files
4 years ago
Holger Frey
e641c341f8
tests passing after cleanup
4 years ago
Holger Frey
be24fbaaca
linted
4 years ago
Holger Frey
9acf7d9c0a
added measurement normalization
4 years ago
Holger Frey
e7c56a1f3a
measurement parameters are parsed again
4 years ago
Holger Frey
8b782f75ff
removed params info parsing
4 years ago
Holger Frey
ec1d7bd8f3
renamed project
5 years ago
Holger Frey
ef00e80700
moved main code into .parser submodule
...
this should lead to a cleaner structur when a cli module is added.
Also the public facing methods are now clearly defined.
5 years ago
Holger Frey
3c20598927
working parser, cli missing
5 years ago
Holger Frey
fabbbe3621
parsing of CSV data files
5 years ago
Holger Frey
535490fd84
import of project template
5 years ago