holgi
/
sensospot_parser
1
0
Fork 0
Code Issues Pull Requests Releases Wiki Activity
Parsing the numerical output from Sensovation SensoSpot image analysis.
You can not select more than 25 topics Topics must start with a letter or number, can include dashes ('-') and can be up to 35 characters long.
19 Commits
2 Branches
6 Tags
8.8 MiB
 
 
 
Tree: 8643219e32
Branches Tags
${ item.name }
Create tag ${ searchTerm }
Create branch ${ searchTerm }
from '8643219e32'
${ noResults }
Holger Frey 8643219e32
removed normalization module, will be rewritten 		5 years ago
example_data working parser, cli missing 6 years ago
sensospot_data removed normalization module, will be rewritten 5 years ago
tests removed normalization module, will be rewritten 5 years ago
.gitignore some errors fixed in production 5 years ago
.pre-commit-config.yaml added measurement normalization 5 years ago
CHANGES.md api changes 5 years ago
CONTRIBUTING.md import of project template 6 years ago
LICENSE import of project template 6 years ago
Makefile linted 5 years ago
README.md api changes 5 years ago
pyproject.toml some errors fixed in production 5 years ago
tox.ini import of project template 6 years ago

README.md

Sensospot Data Parser

Parsing the numerical output from Sensovation Sensospot image analysis.

Example:


    import sensospot_data

    # read the raw data of a folder
    raw_data = sensospot_data.process_folder(<path to results directory>)

    # split the measurement according to channels
    channels = sensospot_data.split_channels(raw_data [, optional_exposure_map])

    # normalize one channel to a specific exposure time
    cy5_normalized = sensospot_data.normalize_channel(channels["cy5"], normalized_time=25)

Development

To install the development version of Sensovation Data Parser:

git clone https://git.cpi.imtek.uni-freiburg.de/holgi/sensospot_data.git

# create a virtual environment and install all required dev dependencies
cd sensospot_data
make devenv

To run the tests, use make tests (failing on first error) or make coverage for a complete report.